QData

Repositories

• TextAttack

  TextAttack 🐙 is a Python framework for adversarial attacks, data augmentation, and model training in NLP https://textattack.readthedocs.io/en/latest/

  nlp security machine-learning natural-language-processing data-augmentation adversarial-machine-learning adversarial-examples
  Python MIT 189 1,560 36 (6 issues need help) 3 Updated Jul 27, 2021

• deep2Read

  https://qdata.github.io/deep2Read/ This website includes a (growing) list of papers and lectures we read on deep learning and related.

  jekyll deep-learning tutorials papers gitpage minimal-mistakes-theme minimal-mistake
  Ruby Apache-2.0 13 44 0 0 Updated Jul 16, 2021

• qdata-page

  https://qdata.github.io/qdata-page/
  HTML Apache-2.0 0 0 0 0 Updated Jul 3, 2021

• C-Tran

  General Multi-label Image Classification with Transformers

  computer-vision transformers multi-label-classification
  Python 8 44 2 0 Updated Jun 18, 2021

• DeepVHPPI

  Motif Transformers for Predicting Protein-Protein Interactions Between a Novel Virus and Humans
  0 0 0 0 Updated Jun 8, 2021

• LaMP

  ECML 2019: Graph Neural Networks for Multi-Label Classification

  nlp computer-vision transformers multi-label-classification graph-attention-networks graph-neural-networks
  Python MIT 16 68 2 0 Updated May 31, 2021

• FastSK

  Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.io/en/master/

  cpp python-library sequence-classification string-kernel string-classification gkm-svm
  Python Apache-2.0 8 15 0 0 Updated May 11, 2021

• deep_control

  Deep Reinforcement Learning for Continuous Control in Pytorch
  Python 1 1 0 0 Updated Apr 18, 2021

• DeepChrome

  Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications

  bioinformatics deep-neural-networks understanding-computation epigenetic-data
  Lua Apache-2.0 16 53 1 0 Updated Feb 15, 2021

• AttentiveChrome

  NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chromatin

  deep-learning epigenetic-data deep-neural-network interpretable-deep-learning
  Lua MIT 6 24 0 0 Updated Feb 8, 2021

• ChromeGCN

  Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification

  genomics dna hi-c dna-sequences graph-convolutional-networks graph-neural-networks
  Python 5 19 0 0 Updated Feb 2, 2021

• Reevaluating-NLP-Adversarial-Examples

  EMNLP Findings 2020: Reevaluating Adversarial Examples in Natural Language

  semantics natural-language textattack suspicion
  Jupyter Notebook 2 7 0 0 Updated Dec 11, 2020

• TextAttack-WebDemo

  TextAttack Web Demo

  visualization natural-language-processing interpreter human-computer-interaction robustness textattack
  Jupyter Notebook Apache-2.0 3 4 0 0 Updated Nov 27, 2020

• dmc_remastered

  A version of the DeepMind Control Suite with randomly generated graphics, for measuring visual generalization in continuous control.
  Python Apache-2.0 0 2 0 0 Updated Oct 19, 2020

• Awesome-Robustness-Testing-for-NLP

  A curated list of papers on testing NLP.
  0 4 0 0 Updated Oct 19, 2020

• deep-learning-undergrad-reading-group

  deep learning reading group for undergrads at UVA
  SCSS 0 1 0 0 Updated Oct 18, 2020

• DeepLearning4-ProteinSequenceProcessing

  (AAAI 2016) MUST-CNN: A Multilayer Shift-and-Stitch Deep Convolutional Architecture for Sequence-Based Protein Structure Prediction"
  Lua 0 0 0 0 Updated Oct 16, 2020

• TextAttack-Search-Benchmark

  EMNLP BlackBox NLP 2020: Searching for a Search Method: Benchmarking Search Algorithms for Generating NLP Adversarial Examples

  search-algorithm adversarial-attacks textattack strict-constraints attack-recipe
  Jupyter Notebook 3 13 0 0 Updated Oct 11, 2020

• AdversarialDNN-Playground

  VizSec17: Web-based visualization tool for adversarial machine learning / LiveDemo

  visualization python machine-learning deep-neural-networks neural-network tensorflow adversarial-samples
  Python Apache-2.0 28 115 1 0 Updated Sep 25, 2020

• deepWordBug

  CodeBase for Paper: "Black-box Generation of Adversarial Text Sequences to Evade Deep Learning Classifiers", / Interactive Demo @
  Python Apache-2.0 23 48 0 0 Updated Sep 25, 2020

• DeepDiffChrome

  "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,
  Python Apache-2.0 6 17 0 0 Updated Dec 10, 2019

• JointNets

  JointNets: an end-to-end R package for sparse high-dimensional Gaussian graphical model estimation, visualization, simulation and evaluation.
  R Apache-2.0 0 2 0 0 Updated Nov 14, 2019

• JEEK

  ICML18: JEEK - Fast and Scalable Joint Estimator for Integrating Additional Knowledge in Learning Multiple Related Sparse Gaussian Graphical Models
  R Apache-2.0 0 1 0 0 Updated Aug 28, 2019

• GaKCo-SVM

  ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting

  kernel fasta gakco-svm
  C++ Apache-2.0 5 13 0 0 Updated Aug 28, 2019

• DIFFEE

  AISTAT2018: Fast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure
  R Apache-2.0 0 0 0 0 Updated Aug 28, 2019

• DeepCloak

  ICLR16: DeepCloak: Masking Deep Neural Network Models for Robustness Against Adversarial Samples

  mask residual-networks robustness adversarial-samples
  Lua Apache-2.0 0 6 0 0 Updated Aug 28, 2019

• FASJEM

  AISTAT 2017 Paper: A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models

  machine-learning graphical-models multitasking gaussian-graphical-models
  R Apache-2.0 0 0 0 0 Updated Aug 28, 2019

• SIMULE

  Machine Learning 2017 / "A constrained L1 minimization approach for estimating multiple Sparse Gaussian or Nonparanormal Graphical Models", / https://cran.r-project.org/web/packages/simule/

  graphical-models gaussian-graphical-models covariance-matrices data-matrices
  R Apache-2.0 1 3 0 0 Updated Aug 28, 2019

• TransferStringKernel

  Transfer String Kernel for Cross-Context String Classification
  MATLAB Apache-2.0 1 1 0 0 Updated Aug 28, 2019

• Paper12-PlosOne-DeepProteinMultitaskTagging

  Forked from DeepLearning4BioSeqText/Paper12-PlosOne-DeepProteinMultitaskTagging

  A Deep-Learning based Multi-Task Framework for Protein Sequence Labeling / Local Structural Property Prediction on biological Sequences
  Lua Apache-2.0 3 0 0 0 Updated Aug 28, 2019