Epistasis Lab at UPenn

Repositories

• srbench

  A living benchmark framework for symbolic regression
  Jupyter Notebook GPL-3.0 13 19 5 (1 issue needs help) 1 Updated Jul 3, 2021

• digen

  Diverse and generative ML benchmarks
  Jupyter Notebook MIT 0 0 0 0 Updated Jul 3, 2021

• tpot

  A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

  python data-science machine-learning automation random-forest scikit-learn model-selection
  Python LGPL-3.0 1,407 8,095 215 8 Updated Jul 1, 2021

• pennai

  PennAI: AI-Driven Data Science
  Jupyter Notebook GPL-3.0 52 158 43 (3 issues need help) 9 Updated Jul 1, 2021

• STAR_outliers_analysis
  Python 0 0 0 0 Updated Jun 30, 2021

• STAR_outliers
  Python 0 0 0 0 Updated Jun 29, 2021

• pennai-ed-gen

  Forked from RPi-Distro/pi-gen

  Fork of `pi-gen` used to build Raspberry Pi OS images for PennAI-Ed
  Shell BSD-3-Clause 1,114 0 0 0 Updated Jun 4, 2021

• pmlb

  PMLB: A large, curated repository of benchmark datasets for evaluating supervised machine learning algorithms.
  Python MIT 102 619 10 (5 issues need help) 0 Updated May 28, 2021

• ellyn

  python-wrapped version of ellen, a linear genetic programming system for symbolic regression and classification.
  C++ 10 33 3 0 Updated May 21, 2021

• scikit-rebate

  A scikit-learn-compatible Python implementation of ReBATE, a suite of Relief-based feature selection algorithms for Machine Learning.

  python data-science feature-selection
  Python MIT 61 324 13 (6 issues need help) 1 Updated May 18, 2021

• bf-utils

  Blackfynn Utilities
  Python 2 3 0 0 Updated May 13, 2021

• EBIC.jl

  EBIC - a biclustering algorithm in Julia
  Julia MIT 0 4 0 0 Updated May 1, 2021

• regens

  Recombines real genomic segments to simulate whole genomes

  simulated-datasets gwas-tools
  Python MIT 2 3 0 0 Updated Mar 5, 2021

• TTox

  Forked from yhao-compbio/TTox

  Develop and evaluate a feature selection pipeline for the identification of toxicity targets
  Shell 1 0 0 0 Updated Feb 26, 2021

• PennAI-Ed

  Materials for PennAI-Ed - an initiative to enhance AI and data science education built on PennAI
  Shell GPL-3.0 0 1 0 0 Updated Feb 17, 2021

• Conservation-Machine-Learning

  Conservation Machine Learning
  Python GPL-3.0 0 1 0 0 Updated Feb 3, 2021

• LPC

  Documentation and informational resources for LPC use
  MIT 4 1 0 0 Updated Jan 19, 2021

• pennai-arm64-deps

  Pre-compiled dependencies for building PennAI Docker images on 64-bit ARM OSs (e.g., raspberry pi)
  0 1 0 0 Updated Jan 15, 2021

• regens-analysis
  Shell 1 1 0 0 Updated Nov 25, 2020

• pennai-bioinformatics

  Code to reproduce the experiments in "Evaluating recommender systems for AI-driven biomedical informatics"
  Jupyter Notebook 0 0 1 0 Updated Nov 19, 2020

• pmlbr

  Forked from trang1618/pmlblite

  pmlb is an R interface to the Penn Machine Learning Benchmarks data repository
  R 2 7 0 0 Updated Nov 2, 2020

• pmlb-manuscript

  Manuscript for PMLB v1.0
  HTML 5 0 0 0 Updated Oct 14, 2020

• EpistasisLab.github.io

  Identifying the complex genetic architectures of disease
  4 6 0 0 Updated Sep 24, 2020

• 3DHeatmap

  3D Heatmap tool in Unity3D. Inst. for Biomed. Informatics, Univ. of PA
  C# MIT 3 4 1 0 Updated Aug 25, 2020

• SimpleModelView

  A Unity package for a simplified model-view system to help with code<->UI management.
  ShaderLab MIT 1 1 0 0 Updated Aug 18, 2020

• rebate-benchmark

  A centralized repository to benchmark ReBATE performance across a variety of parameter settings and datasets.
  Jupyter Notebook MIT 0 4 0 1 Updated Jul 2, 2020

• OMNIREP

  The OMNIREP algorithm: Coevolving encodings and representations

  python automation evolutionary-algorithms coevoluton
  Python GPL-3.0 2 1 0 0 Updated Jun 2, 2020

• SAFE

  The SAFE Algorithm: Solution and Fitness Evolution

  python automation evolutionary-algorithms coevoluton
  Python GPL-3.0 4 2 1 0 Updated Jun 2, 2020

• scikit-mdr

  A sklearn-compatible Python implementation of Multifactor Dimensionality Reduction (MDR) for feature construction.
  Python MIT 21 114 9 (2 issues need help) 0 Updated Apr 3, 2020

• mrsman

  Medical Record System Management
  Python 1 0 0 0 Updated Apr 1, 2020