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72 followers · 6 following · 83
  • Walter and Eliza Hall Institute of Medical Research
  • Melbourne
  • @steman_research

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Arctic Code Vault Contributor

Achievements

Arctic Code Vault Contributor

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  • Pro

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@PapenfussLab @tidytranscriptomics-workshops
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Pinned

  1. tidyHeatmap

    Draw heatmap simply using a tidy data frame

    R 166 13

  2. tidybulk Template

    Brings transcriptomics to the tidyverse

    R 101 11

  3. tidyseurat

    Seurat meets tidyverse. The best of both worlds.

    R 56 6

  4. tidySingleCellExperiment

    Brings SingleCellExperiment objects to the tidyverse

    R 10

  5. tidygate

    Label elements within user drawn gates

    R 9 1

  6. ppcseq

    Probabilistic outlier identification for bulk RNA sequencing data

    R 4 3

2,189 contributions in the last year

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Contribution activity

August 2021

Created 26 commits in 6 repositories
Created 1 repository

Created a pull request in stemangiola/bioc2021_tidytranscriptomics that received 1 comment

what is transcriptomics seems duplicated somehow?

+0 −90 • 1 comment
Opened 10 other pull requests in 5 repositories
stemangiola/tidyseurat 1 open 2 merged
stemangiola/tidySingleCellExperiment 1 open 2 merged
stemangiola/cellsig 1 merged 1 open
stemangiola/tidytranscriptomics 1 merged
stemangiola/bioc2021_tidytranscriptomics 1 merged

Created an issue in stemangiola/sccomp that received 18 comments

Rather than using false_positive_percentage to set your stringency, we use a new column that I created that is called false_positive_rate.

We will test false positive rate of 0.01, 0.02, .... and plot real false positive rate vs. estimated. For this you have to merge the changes presen…

18 comments
Opened 6 other issues in 5 repositories
stemangiola/cellsig 2 open
stemangiola/single_cell_outliers 1 open
stemangiola/sccomp 1 open
stemangiola/tidytranscriptomics 1 closed
stemangiola/bioc2021_tidytranscriptomics 1 open