#
sequencing
Here are 280 public repositories matching this topic...
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
science
machine-learning
bioinformatics
deep-learning
genomics
genome
tensorflow
ngs
sequencing
dna
deep-neural-network
deepvariant
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Jun 8, 2021 - Python
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
adapter
quality
bioinformatics
quality-control
filter
ngs
sequencing
overlap
splitting
duplication
umi
trimming
overlapping
preprocessing
filtering
illumina
fastq
merging
qc
polyg
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Apr 25, 2021 - C++
Data intensive science for everyone.
docker
science
workflow
bioinformatics
pipeline
genomics
workflow-engine
ngs
sequencing
dna
usegalaxy
hacktoberfest
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Updated
Jun 26, 2021 - Python
Analysis of single cell RNA-seq data course
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Updated
May 20, 2021 - TeX
Simple & Efficient data access for Scala and Scala.js
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Updated
Jun 14, 2021 - Scala
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
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Updated
May 24, 2021 - Nim
A Python library for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC messages, or custom events.
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Jun 7, 2021 - Python
Open
bed or gff
yannickwurm
commented
Nov 19, 2020
We should enable a slightly-modified table output format that is gff or bed-like and can thus be more easily read into IGV
Analysis Pipeline for Single Cell ATAC-seq
machine-learning-algorithms
sequencing
epigenetics
bioinformatics-pipeline
single-cell-analysis
single-cell-atac-seq
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Mar 3, 2021 - R
Rapid large-scale prokaryote pan genome analysis
bioinformatics
research
genomics
pathogen
sequencing
next-generation-sequencing
bioinformatics-pipeline
global-health
infectious-diseases
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Updated
Sep 26, 2020 - Perl
A repository for setting up a RNAseq workflow
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Apr 10, 2017 - R
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
bioinformatics
quality-control
ngs
sequencing
overlap
error
trimming
filtering
fastq
qc
adapter-trimming
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Updated
May 14, 2020 - Python
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
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Updated
Jun 2, 2021 - Python
Finds SNP sites from a multi-FASTA alignment file
bioinformatics
research
genomics
pathogen
sequencing
next-generation-sequencing
bioinformatics-pipeline
global-health
infectious-diseases
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Updated
Dec 16, 2020 - C
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
bioinformatics
research
genomics
pathogen
sequencing
next-generation-sequencing
bioinformatics-pipeline
global-health
infectious-diseases
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Updated
Oct 13, 2020 - Java
A tool to circularize genome assemblies
bioinformatics
research
genomics
pathogen
sequencing
next-generation-sequencing
bioinformatics-pipeline
global-health
infectious-diseases
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Updated
Apr 13, 2021 - Python
UGENE is free open-source cross-platform bioinformatics software
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Jun 26, 2021 - C++
Genomics Extension for SQLite
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Updated
Jun 12, 2021 - C++
Structural variant toolkit for VCFs
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Updated
Jun 14, 2021 - Python
Antimicrobial Resistance Identification By Assembly
bioinformatics
research
genomics
pathogen
sequencing
next-generation-sequencing
bioinformatics-pipeline
global-health
infectious-diseases
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Updated
Dec 1, 2020 - Python
Accurate and flexible loops calling tool for 3D genomic data.
python
bioinformatics
algorithm
pipeline
tool
clustering
ngs
sequencing
example-data
hi-c
dbscan
3d-genome
chia-pet
chromatin-interaction
stripes
hichip
chromatin-loops
chromatin-stripes
loops-calling
trac-looping
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Dec 8, 2020 - Python
A minimal and human-readable language and environment for the live coding of algorithmic electronic music.
language
performance
osc
creative-coding
sequencing
live-coding
livecoding
visuals
mercury
algorithmic-composition
sounds
mercury-environment
human-readable-language
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Jun 12, 2021 - Max
BAM Statistics, Feature Counting and Annotation
alfred
quality
quality-control
sequencing
read-counts
insert-size
coverage-distribution
alignment-metrics
feature-counting
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Jun 15, 2021 - C++
Polyrhythmic Sequencer library for Web Audio API.
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Mar 10, 2021 - JavaScript
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
rna-seq
sequencing
transcriptome
transcriptomics
single-cell
marker-genes
seurat
cluster-annotation
cell-markers
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Updated
Sep 23, 2020 - R
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We need some good graphics for the main sampler screen. This is where you can do rudimentary editing of the samples that are played in the sequencer.
There are two screens. The main screen with the controls: