bam

a pytorch lib with state-of-the-art architectures, pretrained models and real-time updated results

C library for high-throughput sequencing data formats

Tools for working with SAM/BAM data

A Java API for high-throughput sequencing data (HTS) formats.

Syntax highlighting for computational biology

Dashboard composition tooling based on the Uberfire framework

Viral genomics analysis pipelines

A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.

Win 10 related research

Learning the Sequence Alignment/Map format

A DNA Sequence Alignment/Map (SAM) library for Clojure

FaceBook Instant Game - BAM Quiz

Compressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too

Simple pure Python SAM parser and objects for working with SAM records

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

A D library for computational biology and bioinformatics

pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)

useful command-line tools written to showcase hts-nim

My bioinfo toolbox

nest-rabbit-worker is a TaskQueue based upon RabbitMQ for NestJS

Tools for querying and analysis of genomic data

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature

pythonic wrapper for htslib

Syntax highlighting for computational biology

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Bioinformatics library in Kotlin

ZAM: Zero parameter Attention Module

Fast and accurate sequence demultiplexing