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May 14, 2021 - Jupyter Notebook
#
computational-biology
Here are 562 public repositories matching this topic...
WebGL accelerated JavaScript molecular graphics library
OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research
machine-learning
deep-neural-networks
deep-learning
computational-biology
pytorch
computational-chemistry
drug-discovery
drug-design
predictive-modeling
graph-convolutional-networks
qsar
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Mar 11, 2021 - Python
Working with molecular structures in pandas DataFrames
bioinformatics
pdb
molecular-structures
pandas-dataframe
protein-structure
molecule
computational-biology
drug-discovery
molecules
mol2
pdb-files
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Apr 7, 2021 - Python
aloktiagi
commented
Aug 3, 2020
Hi,
It would be nice to have the capability to expand/collapse nodes similar to https://github.com/iVis-at-Bilkent/cytoscape.js-expand-collapse.
Thanks.
A high-performance, Pythonic language for bioinformatics
python
programming-language
bioinformatics
compiler
genomics
computational-biology
domain-specific-language
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May 15, 2021 - C++
Midnighter
commented
Oct 7, 2020
The environment variables in the scripts/deploy_website.sh script assume a Travis environment and will need to be adjusted.
eselkin
commented
Jul 27, 2019
Add departments column and values for PIs at Stanford University
A publicly-editable collection of open computational neuroscience resources
awesome
computational-biology
neuroscience
computational-neuroscience
open-science
awesome-list
brain
neuroimaging-data
neuroscience-methods
neuroscience-data
neural-simulators
electrophysiological-data
neuron-models
neural-simulations
simulation-neuroscience
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May 11, 2021
Protein Graph Library
bioinformatics
deep-learning
structural-biology
protein-data-bank
protein-structure
computational-biology
pytorch
protein
protein-design
geometric-deep-learning
graph-neural-networks
dgl
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May 9, 2021 - Jupyter Notebook
Ten Quick Tips for Deep Learning in Biology
data-science
machine-learning
bioinformatics
deep-learning
genomics
biology
computational-biology
manuscript
manubot
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May 15, 2021 - HTML
Syntax highlighting for computational biology
syntax-highlighting
vim
less
bioinformatics
pdb
sublime-text
computational-biology
gedit
vcf
fasta
bam
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Feb 10, 2020 - Shell
Next generation sequencing reads de novo assembler.
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Apr 19, 2021 - C
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
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Nov 4, 2020 - Python
Variational Autoencoder for Dimensionality Reduction of Time-Series
python
deep-learning
time-series
molecular-dynamics
computational-biology
pytorch
computational-chemistry
variational-autoencoder
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Jul 29, 2019 - Jupyter Notebook
A comprehensive library for computational molecular biology
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May 12, 2021 - Python
Deep learning meets molecular dynamics.
python
markov-model
machine-learning
deep-learning
time-series
tensorflow
computational-biology
pytorch
computational-chemistry
autoencoder
data-analysis
dimension-reduction
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May 3, 2019 - Jupyter Notebook
dna2vec: Consistent vector representations of variable-length k-mers
python
nlp
machine-learning
bioinformatics
neural-network
word2vec
word-embeddings
ml
computational-biology
embeddings
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Apr 20, 2021 - Python
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
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May 12, 2021 - Python
Race and ethnicity Imputation from Disease history with Deep LEarning
machine-learning
bioinformatics
deep-learning
biology
computational-biology
neural-networks
imputation
epidemiology
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Jul 17, 2018 - Python
Python3 binding to mRMR Feature Selection algorithm (currently not maintained)
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May 11, 2021 - C++
Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling
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Sep 4, 2020 - Python
A Go package for engineering organisms.
bioinformatics
genomics
gff3
biology
synthetic-biology
computational-biology
dna
genbank
fasta
molecular-biology
synbio
bioengineering
primer-design
plasmids
sponsor
codon-optimizer
genetic-engineering
engineering-organisms
sequence-hashing
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May 16, 2021 - Go
Chaste - Cancer Heart And Soft Tissue Environment - main public repository
c-plus-plus
computational-biology
electrophysiology
mathematical-modelling
hpc-applications
cancer-research
mathematical-biology
developmental-biology
cell-based
physiology
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May 14, 2021 - C++
Clustering scRNAseq by genotypes
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Mar 19, 2021 - Python
Web application for enormous biological heatmaps
r
web-server
heatmap
computational-biology
high-performance-computing
graphics-rendering
interactive-biological-heatmaps
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Jul 18, 2020 - R
Python Programming for Biologists
python
programming-language
bioinformatics
programming
biology
computational-biology
python3
biology-education
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May 11, 2021 - Python
Predicting protein structure through sequence modeling
machine-learning
structural-biology
protein-structure
computational-biology
attention
sequence-to-sequence
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May 4, 2020 - Jupyter Notebook
Infectious Disease Sequencing Platform
science
bioinformatics
research
genomics
biology
sequencing
computational-biology
next-generation-sequencing
bioinformatics-pipeline
global-health
virology
infectious-diseases
metagenomic
idseq
idseq-web
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May 14, 2021 - JavaScript
The Biochemical Algorithms Library
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Apr 26, 2021 - C++
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I was trying to figure out why we get memory leaks in osim-rl. I use a slightly different custom version of osim-rl. However, it seems that everything points towards the integrate function of the Manager. The new version of the Manager does not have a reset mechanism and therefore one must delete the manager and create a new one. I have a minimu