#
transcriptomics
Here are 229 public repositories matching this topic...
An interactive explorer for single-cell transcriptomics data
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Apr 27, 2021 - Python
ivirshup
commented
Jan 5, 2021
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
visualization
gui
shiny
clustering
gene-expression
feature-extraction
transcriptomics
single-cell
hacktoberfest
dimension-reduction
human-cell-atlas
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Apr 26, 2021 - R
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
tutorial
metabolomics
reconstruction
transcriptomics
cobra
metabolic-models
strain-engineering
metabolic-reconstruction
constraint-based-modeling
microbiome-analysis
metabolic-engineering
gap-filling
cobra-toolbox
omics-data-integration
human-metabolism
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Apr 28, 2021 - MATLAB
starfish: unified pipelines for image-based transcriptomics
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Apr 16, 2021 - Python
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
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Apr 26, 2021 - Python
R package for analyzing single-cell RNA-seq data
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Updated
Apr 5, 2020 - R
Single cell perturbation prediction
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Updated
Apr 14, 2021 - Python
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
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Apr 18, 2021 - JavaScript
Brings transcriptomics to the tidyverse
pipe
tidy-data
tidyverse
pca
bioconductor
deseq2
entrez
tidy
transcripts
transcriptomics
tsne
differential-expression
edger
redundancy
gsea
tibble
gene-symbols
bulk-transcriptional-analyses
mds-dimensions
ensembl-ids
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Apr 26, 2021 - R
Differential expression analysis for single-cell RNA-seq data.
bioinformatics
tensorflow
transcriptomics
gene-set-enrichment
differential-expression
single-cell-rna-seq
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Mar 9, 2021 - Python
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
rna-seq
sequencing
transcriptome
transcriptomics
single-cell
marker-genes
seurat
cluster-annotation
cell-markers
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Sep 23, 2020 - R
HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
hmm
bioinformatics
bayesian
transcriptomics
subpopulation
heterogeneity
single-cell-rna-seq
single-cell-analysis
cnv-detection
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Updated
Feb 16, 2021 - R
Fusing Histology and Genomics via Deep Learning.
genomics
fusion
transcriptomics
pathology
multimodal
multimodal-data
histopathology
computational-pathogenomics
mrnaseq
pathomic
multimodal-network
mahmoodlab
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Sep 10, 2020 - Jupyter Notebook
Hierarchical, iterative clustering for analysis of transcriptomics data in R
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Mar 30, 2021 - R
A tool to identify, orient, trim and rescue full length cDNA reads
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Mar 16, 2021 - Python
Multi-sample Unified Discriminant ANalysis
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Oct 6, 2020 - R
Detection of differential RNA modifications from direct RNA sequencing
machine-learning
rna-seq
genomics
rna
transcriptomics
modification
nanopore-sequencing
rna-modifications
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Updated
Apr 3, 2021 - Python
Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
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Mar 29, 2021 - R
A list of web-based interactive biological data visualizations.
visualization
awesome
medicine
genomics
cancer
biology
data-visualization
awesome-list
transcriptomics
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Apr 1, 2021
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Jan 18, 2021 - Rust
Tools to annotate genomes using long read transcriptomics data
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Dec 8, 2020 - Go
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
gui
r
shiny
reproducible-research
gene-expression
data-visualization
bioconductor
transcriptome
user-friendly
data-exploration
transcriptomics
rna-seq-analysis
pathway-analysis
rna-seq-data
bioconductor-package
functional-enrichment-analysis
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Mar 13, 2021 - R
Reference-free Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
deep-learning
annotation
scrna-seq
transcriptomics
single-cell
cell-type-classification
gnn
graph-neural-network
reference-free
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Apr 21, 2021 - Python
MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets
bioinformatics
rna-seq
exploratory-data-analysis
transcriptomics
mog
cancer-data
big-data-visualization
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Apr 26, 2021 - Java
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data
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Mar 16, 2021 - Shell
Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
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Apr 27, 2021 - R
Pipeline for annotating genomes using long read transcriptomics data with pinfish
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Dec 8, 2020 - Python
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Meta-issue for tracking the addition of rendered plots in the examples sections of the API docs (initial functionality implemented in #1632).
We now allow code samples which generate plots in our docs. See the examples sections of
calculate_qc_metricsand [dotplot](https://scanp