hemberg-lab

Repositories

• MicroExonator

  Snakemake pipeline for microexon discovery and quantification
  Python 3 5 0 1 Updated May 19, 2020

• scfind
  R GPL-3.0 6 11 1 1 Updated May 18, 2020

• RNA_seq_snakepipes

  Forked from geparada/RNA_seq_course2020
  HTML 7 1 0 0 Updated May 12, 2020

• scRNA.seq.course

  Forked from rstudio/bookdown-demo

  Analysis of single cell RNA-seq data course

  r course sequencing bookdown scrna-seq scrna-seq-analysis
  TeX GPL-3.0 914 415 19 4 Updated May 5, 2020

• scmap

  A tool for unsupervised projection of single cell RNA-seq data

  r projection-mapping single-cell-rna-seq bioconductor-package human-cell-atlas
  R GPL-3.0 7 60 8 1 Updated Apr 9, 2020

• SC3

  A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

  single-cell-rna-seq bioconductor-package human-cell-atlas
  R GPL-3.0 51 79 14 1 Updated Dec 17, 2019

• scfind-paper-figures

  Scripts to recreate figures from the scfind paper
  HTML GPL-3.0 0 0 0 0 Updated Nov 19, 2019

• sctransfermap

  prediction of cell type from single-cell data
  R 1 0 0 0 Updated Nov 8, 2019

• scfind-shiny
  HTML GPL-3.0 3 2 0 0 Updated Oct 15, 2019

• scRNA.seq.datasets

  Collection of public scRNA-Seq datasets used by our group

  docker jenkins aws openstack mkdocs dataset s3-storage
  R GPL-3.0 44 96 3 7 Updated Oct 9, 2019

• Georgakopoulos_Soares_and_Parada_2019
  HTML 0 0 0 0 Updated Jul 8, 2019

• SnakePool
  Python 0 0 0 0 Updated Mar 29, 2019

• D3E

  Discrete Distributional Differential Expression

  differential-expression single-cell-rna-seq human-cell-atlas
  Python GPL-3.0 5 13 3 0 Updated Jan 3, 2019

• nrg-paper-figures
  R GPL-3.0 1 0 0 0 Updated Nov 15, 2018

• scmap-shiny
  HTML GPL-3.0 3 7 0 0 Updated Jun 27, 2018

• scmap-paper-figures

  Scripts to recreate figures from the scmap paper
  R LGPL-3.0 3 3 1 0 Updated Mar 13, 2018

• tutorials
  HTML GPL-3.0 1 1 0 0 Updated Dec 5, 2017

• SC3-paper-figures

  Scripts to recreate figures from the SC3 paper
  R GPL-3.0 15 25 0 0 Updated Mar 1, 2017

• FastSC3

  A tool for fast unsupervised clustering of very large single cell RNA-Seq data
  R 0 2 0 0 Updated Dec 12, 2016

• scRNA.seq.funcs

  R package containing our own functions used in the scRNA.seq.course
  R 1 2 0 0 Updated Jun 20, 2016

• MPRAnator

  A webtool to create DNA sequence variants
  Python 1 1 0 0 Updated Dec 27, 2015