omero

OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.

Browse your OMERO database from within napari.

Sphinx-based documentation for the Open Microscopy Environment

An OMERO.web app allowing to view images

An OMERO.web app for creating Figures from images in OMERO

Experimental micro-service for implementing the Zarr spec over HTTP

Continuous integration tool for OME projects

OMERO Docker compose example

Core OMERO Scripts

A module with convenience functions for writing Python code that interacts with OMERO.

Python project containing Ice remoting code for OMERO

OMERO.server production docker image

Examples playbooks for installing OMERO with Ansible and Docker

Kubernetes Helm charts for OMERO

Extension to OMERO.web to enhance metadata input and provide provenance

Plugins for OMERO

OMERO R Gateway

An OMERO.web app allowing to browse the data through attributes linked to the image

Gradle project containing insight java client for OMERO

OMERO plugin for metadata manipulation https://www.openmicroscopy.org/omero/

OMERO.web production docker image

Extensions to OMERO.web to enhance tagging and searching

OMERO installation scripts

OMERO.web app to animate multi-dimensional microscopy using 3Dscript, directly from within the OMERO environment.

A module and scripts for working with OMERO

OMERO marshalling infrastructure

OMERO.web EMDB