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The Wayback Machine - https://web.archive.org/web/20210208194127/https://github.com/topics/fastq
Here are
163 public repositories
matching this topic...
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
Versatile open-source tool for microbiome analysis
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Updated
May 14, 2020
Python
Viral genomics analysis pipelines
Updated
Nov 3, 2020
Python
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
An efficient FASTQ manipulation suite
Detect and visualize target mutations by scanning FastQ files directly
A collection of scripts and notes related to genomics and bioinformatics
Simple FASTQ quality assessment using Python
Updated
Dec 14, 2020
Python
FastQC port to Qt5: A quality control tool for high throughput sequence data.
💾 📃 "Reads to report" for public health and clinical microbiology
A DNA Sequence Alignment/Map (SAM) library for Clojure
Updated
Feb 8, 2021
Clojure
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
Efficient handling of FASTQ files from Python
Updated
May 2, 2020
Python
Compressor for genomic files (FASTQ, SAM/BAM, VCF, FASTA, GVF, 23andMe...), up to 5x better than gzip and faster too
Updated
Nov 2, 2020
Python
Exome/Capture/RNASeq Pipeline Implementation using snakemake
Updated
Mar 26, 2018
Python
Randomly subsample sequencing reads to a specified coverage
Updated
Jan 25, 2021
Rust
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.
Parse and process FASTA and FASTQ formatted files of biological sequences.
Updated
Nov 15, 2020
Julia
Ultra-fast Multi-threaded FASTQ Demultiplexing
Updated
Mar 21, 2020
Rust
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
Simulate metagenomic short reads from one or more populations.
Updated
Jun 7, 2020
Python
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How to repeat the problem
This code is accepted and nothing in the documentation suggests that this doesn't work. But when I pass a file called
X.foo.bar