biomarkers

Curated List of Biomarkers, Blood Tests, and Blood Tracking

PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty

Confound-isolating cross-validation approach to control for a confounding effect in a predictive model.

Text mining cancer biomarkers for the CIVIC database

Genetics of blood and urine biomarkers in the UK Biobank

🚀 Food-Biomarker Ontology defines the relationships between foods and their associated metabolites (biomarkers) through a formal ontology

Mendelian Randomization with Biomarker Associations for Causality with Outcomes

Histogram-weighted Networks for Connectivity & Advanced Analysis in Neuroscience

Incidence Estimation Tools

Omics BioAnalytics - RShiny web app for bioinformatics analyses

Pancreatic Cancer Biomarkers Identification Codes & Files

discovering novel biomarkers in RNA-Seq data with tree-based models and survival analysis

A prediction-based extension of network-based statistics.

A Python package for the analysis of biopsychological data.

OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.

Neural Networks for Deep Regression on UK Biobank neck-to-knee body MRI

Code for analysis of metabolomics data for DMD natural history study

bimodal DNN for NSCLC patient overall survival prediction

Repository for codes of my master project and thesis - investigation of whole grain cereal intake biomarkers

A Python package to interact with fasting logs from apps like Zero.

Glioblastoma multiforme (GBM) biomarker knowledge base

Simple scripts to parallelize miRNA analysis with sRNAtoolbox performed for my Master thesis.

Roche entry into Precision FDA hackathon

Resources of the PTSD Biomarker Database

This repository contains the scripts for the ML-Trauma project of the McDevitt Lab at NYU.

Code and data to support doi:10.1136/jitc-2020-001506

Documentation website for standardized imaging biomarkers generated by the Canadian Consortium in Neurodegeneration in Aging

Ensemble Model Biomarker Analysis R package

Predicting eczema severity with biomarkers using a Bayesian state-space model