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The Wayback Machine - https://web.archive.org/web/20210101175524/https://github.com/topics/structural-biology
Here are
76 public repositories
matching this topic...
Updated
Dec 31, 2020
Jupyter Notebook
A comprehensive library for computational molecular biology
Updated
Dec 25, 2020
Python
A dependency-free cross-platform swiss army knife for PDB files.
Updated
Dec 12, 2020
Python
macromolecular crystallography library and utilities
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)
Updated
Jun 4, 2020
Python
A Python framework for structural systems biology
Updated
Dec 7, 2020
Python
An all-atom protein structure dataset for machine learning.
Updated
Dec 27, 2020
Python
The Biochemical Algorithms Library
The Integrative Modeling Platform
C-library for calculating Solvent Accessible Surface Areas
Predicting protein structure through sequence modeling
Updated
May 4, 2020
Jupyter Notebook
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
Updated
Jan 1, 2021
Julia
Control PyMOL sessions via IPython
Updated
Jul 12, 2019
Python
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
Updated
Dec 9, 2020
Python
A framework for rapidly mining structural information from the Protein Data Bank
The MPI Bioinformatics Toolkit
Updated
Dec 26, 2020
Scala
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Updated
Sep 13, 2020
Python
A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto
Updated
Dec 29, 2020
Julia
ResPRE is an algorithm for protein residue-residue contact-map prediction
Updated
May 20, 2019
Python
Rosetta FunFolDes – a general framework for the computational design of functional proteins.
Updated
Apr 12, 2019
Scala
Course materials for the IBioIC Introduction to Bioinformatics training course
BioEn - Bayesian Inference Of ENsembles
Updated
Apr 6, 2020
Python
Python Modeling Interface
Updated
Dec 22, 2020
Python
The database and API backend for ZincBind - the database of zinc binding sites
Updated
Dec 29, 2020
Python
Python package for analyzing hydroxyl-radical footprinting experiments of DNA-protein complexes
Updated
Sep 16, 2020
Python
A VR app which allows creation and manipulation of dynamic models of polypeptides. Focus is fun and learning.
Intelligent System for Analysis, Model Building And Rational Design.
Updated
Apr 20, 2018
Python
3D Printer Compatible Molecular Surface Representation (Do not clone! Everything is in the release page!)
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It'd be useful to have an
executable_pathargument forrun_scwrl,scwrl_availableandpack_side_chains_scwrlwith a default value ofScwrl4(i.e. on the path), so that people can use Scwrl even if it's not on their path.