MCell Team

Repositories

• mesh_tools

  A collection of tools for processing and analyzing surface meshes for use with MCell/CellBlender

  mesh
  Mercury 1 5 0 0 Updated Sep 16, 2020

• mcell_tests

  New tests for MCell4
  Python 0 0 0 0 Updated Sep 16, 2020

• mcell

  MCell Monte Carlo Simulator of Cellular Microphysiology

  simulation mcell cellblender
  C++ 8 24 9 1 Updated Sep 16, 2020

• mcell_tools

  Package build repository
  Python 0 0 0 0 Updated Sep 15, 2020

• nfsim

  Forked from RuleWorld/nfsim

  A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
  C++ GPL-3.0 15 0 0 0 Updated Sep 15, 2020

• nfsimCInterface

  Forked from RuleWorld/nfsimCInterface

  A C interface for the NFSim API
  C++ 2 0 0 0 Updated Sep 14, 2020

• cellblender

  Create, Simulate, Visualize, and Analyze Realistic 3D Cell Models

  blender molecule mcell
  Python GPL-2.0 6 32 30 1 Updated Aug 27, 2020

• bionetgen

  Forked from RuleWorld/bionetgen

  Rule-based modeling framework
  C MIT 19 0 0 0 Updated Aug 27, 2020

• gamer

  Forked from ctlee/gamer

  Geometry-preserving Adaptive Mesher
  C++ LGPL-2.1 7 0 0 0 Updated Jun 30, 2020

• neuropil_tools

  Blender addon to automate annotation and analysis of dendritic spines and axons in neuropil. Requires installation of CellBlender.

  blender mesh
  Python 2 2 9 0 Updated Jun 30, 2020

• swc_mesher

  Creates a Blender Object from an SWC formatted file

  blender mesh mcell cellblender neuron-launcher
  Python 5 5 0 1 Updated Jun 30, 2020

• Workshop_2020

  Repository for models, descriptions, and software supporting the 2020 Workshop

  simulation mcell cellblender bionetgen mcell-tutorials cellblender-model cellorganizer
  Jupyter Notebook 0 1 0 0 Updated Jun 26, 2020

• VTK

  Forked from Kitware/VTK

  Mirror of Visualization Toolkit repository
  C++ 808 0 0 0 Updated Jun 10, 2020

• libMCellPP

  C++ Version of MCell
  Python 3 0 0 0 Updated Apr 14, 2020

• CellBlender_Models

  Repository for CellBlender Models and Examples

  simulation cellblender cellblender-model
  Python 1 0 0 0 Updated Feb 14, 2020

• Workshop_2019

  Repository for models, descriptions, and software supporting the 2019 Workshop
  Jupyter Notebook 4 2 0 0 Updated May 14, 2019

• mcell_x

  Experimental support for rigid body dynamics with stochastic and hydrodynamic interactions
  GPL-2.0 0 0 0 0 Updated Feb 27, 2019

• cellblender_tutorials

  CellBlender Tutorials

  cellblender mcell-tutorials
  Python 1 1 3 0 Updated Nov 21, 2018

• mcell_web

  Provides a simple web interface for running MCell

  mcell
  PHP 0 0 0 0 Updated Nov 14, 2018

• nutmeg

  Forked from haskelladdict/nutmeg

  nutmeg is a concurrent regression test framework for the MCell simulator
  Go BSD-2-Clause 2 1 2 0 Updated Aug 28, 2018

• mcellRules

  Forked from jczech/mcellRules

  Rule Based Modeling using MCell, NFsim, and bionetgen

  mcell bionetgen
  Jupyter Notebook 3 0 0 0 Updated Aug 9, 2018

• gamer-v1

  Geometry-preserving Adaptive Mesh Generator

  mesh blender-addon
  C++ GPL-2.0 6 5 1 0 Updated Jul 9, 2018

• Workshop_2018
  Jupyter Notebook 2 0 0 0 Updated Mar 9, 2018

• bundle_cellblender

  A set of scripts to create bundled versions of CellBlender (with Blender, MCell, BNG, etc)

  cellblender
  Python GPL-2.0 1 0 0 0 Updated Feb 21, 2018

• mcell_vagrantfiles

  A set of Vagrantfiles to quickly spin up VMs for MCell/CellBlender testing and development
  C 0 1 1 0 Updated Feb 5, 2018

• neuron_launcher

  Set of tools in Blender to create models for MCell/Neuron hybrid simulations

  blender swc neuron-simulations mcell cable-model
  C++ 0 2 0 0 Updated Feb 2, 2018

• Workshop_2017

  mcell cellblender bionetgen
  MATLAB 1 0 0 0 Updated Feb 2, 2017

• mcell_galaxy

  Project to create an MCell tool that works within Galaxy

  galaxy mcell
  HTML 1 0 0 0 Updated Nov 17, 2016

• py_mdl_parser

  Pure python regex mdl parser
  Yacc 0 0 0 0 Updated Jul 9, 2016

• Workshop_2016

  Repository for models, descriptions, and code to be used for the 2016 Workshop
  MATLAB 2 0 0 0 Updated Jun 3, 2016