python bioinformatics analysis clustering gene-expression data-visualization dimensionality-reduction awesome-list data-integration atac-seq single-cell rna-seq-data scrna-seq-data cell-cycle cell-differentiation gene-expression-profiles analysis-pipeline cell-populations rna-seq-experiments cell-clusters

heatmap data-visualization data-clustering cell-differentiation epigenetic-data atac-seq-signal

snapshot lineage cell-differentiation atac-seq-signal

dimensionality-reduction tsne principal-component-analysis diffusion-maps cell-differentiation