obo

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Here are 27 public repositories matching this topic...

obophenotype / human-phenotype-ontology

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Ontology for the description of human clinical features

semantic-web owl ontology obo phenotyping phenotype ontologies hpo obofoundry

Updated Feb 10, 2021
Makefile

althonos / pronto

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A Python frontend to Ontologies.

python parser bioinformatics semantic-web owl ontology obo

Updated Feb 2, 2021
Python

geneontology / go-ontology

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Source ontology files for the Gene Ontology

go owl ontology gene-ontology obo obofoundry

Updated Feb 11, 2021
Shell

OBOFoundry / OBOFoundry.github.io

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Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

open-source metadata bioinformatics annotation semantic-web ontology open-science obo life-sciences biocuration ontology-registry obofoundry

Updated Feb 9, 2021
HTML

biolink / ontobio

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python library for working with ontologies and ontology associations

python bioinformatics graph sparql rdf semantic-web ontology gene-ontology obo obofoundry ontology-tools

Updated Feb 10, 2021
Python

dhimmel / obonet

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OBO-formatted ontologies → networkx (Python 3)

python parser network ontology networkx cc0 rephetio obo

Updated Nov 16, 2020
Python

INCATools / ontology-development-kit

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Bootstrap an OBO Library ontology

robot continuous-integration owl ontology travis obo protege

Updated Feb 11, 2021
HTML

pato-ontology / pato

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PATO - the Phenotype And Trait Ontology

semantic-web ontology standards units obo phenotypes quantities trait-ontology qualities

Updated Feb 9, 2021
Makefile

bio-ontology-research-group / unit-ontology

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An ontology of units of measurements

ontology obo units-of-measurement

Updated Nov 24, 2020
Groovy

obo-behavior / behavior-ontology

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Neuro Behaviour Ontology: an ontology for human and animal behaviour processes and behaviour phenotypes

ontology obo web-ontology-language neuro-behaviour-ontology behavioural-phenotypes animal-behaviours

Updated Feb 10, 2021
Makefile

Phenomics / ontolib

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A modern Java library for working with (biological) ontologies.

ontology obo mpo ontology-matching hpo

Updated Feb 20, 2018
Java

mobiusklein / psims

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A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML

xml-serialization obo mzml mzidentml

Updated Jan 28, 2021
Python

EnvironmentOntology / environmental-exposure-ontology

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Modular environmental exposures ontology

environment health owl ontology obo exposure

Updated Feb 11, 2021
HTML

pyobo / pyobo

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📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures

obo ontologies

Updated Feb 7, 2021
Python

mjy / obo_parser

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An OBO file parser.

parser ontology obo

Updated Apr 4, 2019
Ruby

fastobo / fastobo

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Faultless AST for Open Biomedical Ontologies.

ast ontology obo obofoundry

Updated Feb 8, 2021
Rust

cmungall / sweet-obo-alignment

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Alignment between ESIP SWEET and Open Bio Ontologies

environment mapping ontology environment-variables obo sweet

Updated Jul 22, 2019
Makefile

cmungall / chemistry-ontology

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Schema for chemistry ontology classes

schema chemistry owl ontology obo metaclass chebi

Updated Feb 11, 2021
Python

fastobo / fastobo-syntax

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PEG Syntax and pest parser for the OBO flat file format 1.4

syntax parser ontology obo peg pest-parser pest-grammar obofoundry

Updated Sep 28, 2020
Rust

cmungall / dasher

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Base framework for creating semantic QC dashboards

semantic quality-control owl knowledge-graph obo kg qc semweb

Updated Jul 3, 2020
Python

althonos / obofoundry.rs

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Structures to deserialize OBO Foundry listings into.

rust serde obo obofoundry berkeley-bop

Updated Feb 8, 2021
Rust

PNNL-Comp-Mass-Spec / OBO-Data-Converter

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Utility for converting ontology OBO files to a tab-delimited text file.

ontology obo

Updated Mar 27, 2020
C#

bio-ontology-research-group / oboconsistencytest

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ontology obo inconsistency automated-reasoning

Updated Sep 19, 2017
Groovy

Display-Lab / psdo

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Performance Summary Display Ontology

owl ontology obo

Updated Dec 6, 2020
Ruby

cmungall / obo-schema

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obo-schema

schema semantic-web obo

Updated Nov 18, 2020
Python

llrs / ontologyIndex

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ontologyIndex Functions for Reading Ontologies into R

package obo ontologies

Updated Dec 6, 2017
HTML

Planteome / planteome-inca-form

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Configuration for the Planteome INCA

tool trait owl ontology plant obo terminology

Updated Jan 21, 2019
Shell

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