hmmer

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Here are 22 public repositories matching this topic...

tseemann / barrnap

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🔬

♌ Bacterial ribosomal RNA predictor

annotations rna hmm-model hmmer rnammer rrna ribosomal

Updated Jan 2, 2021
Perl

PedroMTQ / mantis

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A package to annotate protein sequences

bioinformatics mantis hmmer protein-function-prediction protein-annotation hmm-sources hits-generated

Updated Apr 23, 2022
Python

sestaton / HMMER2GO

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Annotate DNA sequences for Gene Ontology terms

gene gene-annotation orfs hmmer

Updated Mar 20, 2022
Perl

althonos / pyhmmer

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Cython bindings and Python interface to HMMER3.

bioinformatics python-library python-bindings hidden-markov-model cython-library hmmer sequence-analysis hmmer3

Updated Apr 29, 2022
Cython

EnzoAndree / HmmPy

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A Pure-Python parser of HMMER3 output

hmm bioinformatics filter biological-data-analysis hmmer hmmscan python-parser

Updated Jul 29, 2016
Python

arendsee / rhmmer

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Simple R utilities for working with HMMER

bioinformatics hmmer

Updated Aug 9, 2021
R

NAL-i5K / genomics-workspace

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Open

Document file directories

hsiaoyi0504 opened Sep 26, 2018

good first issue

Open

Document of tests

Arkadiy-Garber / MagicLamp

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A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.

annotation genomics iron hmmer respiration microbial metagenome hmms fegenie magnetosomes lithogenie lithotrophy

Updated Feb 13, 2022
HTML

BFL-lab / Mfannot

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MFannot is a program for the annotation of mitochondrial and plastid genomes

pipeline genome docker-container blast bioperl muscle mitochondrial hmmer erpin umac tbl2asn

Updated Sep 10, 2021
Perl

MGEScan / mgescan

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A Galaxy based system for identifying retrotransposons in genome

bioinformatics ltr galaxy hmmer nonltr mgescan

Updated May 15, 2018
Perl

philippmuench / hmmvis

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basic visualization of hmm profile matches to multiple fasta files

visualization fasta hidden-markov-model hmmer

Updated Apr 3, 2017
Python

MetAnnotate / MetAnnotate

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MetAnnotate is a tool and web application for taxonomic profiling of shotgun metagenomes.

hmm metagenomics hmmer metagenomic-analysis

Updated May 5, 2018
JavaScript

Daniel-Ze / NLRextract

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Find NLR hmms in protein sequences.

open-source open-science hmmer nlr pfam

Updated Feb 24, 2022
Shell

russelllab / precog

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An ML-based predictor of GPCR/G-protein couplings using only sequence information

visualization machine-learning bioinformatics hmmer scikitlearn-machine-learning gpcr

Updated Jun 24, 2021
Python

ctSkennerton / kegg_hmm_models

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Create HMMs from KEGG orthologs

hmm bioinformatics hidden-markov-model kegg hmmer kegg-ortholog kegg-pathway-database

Updated Jul 7, 2018
Makefile

ipb-jianyang / eCIS-screen

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This repository contains the code used for screening putative extracellular Contractile Injection System (eCIS) loci from genomic sequences.

bioinformatics-pipeline bioperl hmmer bacterial-genomes

Updated May 23, 2019
Perl

virtool / workflow-nuvs

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A workflow for identifying novel viruses in Virtool

workflow spades hmmer virtool

Updated Mar 25, 2022
Python

fungs / stockholm2cigar

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Convert Stockholm alignments as output by HMMER to cigar strings

bioinformatics hmmer

Updated Nov 22, 2018
Python

chris-rands / annotated_profile_HMMs

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Sets of protein familes represented as profile HMMs annotated for antibiotic resistance and virulence function.

hmm virulence hmmer antibiotic-resistance

Updated Apr 11, 2019

suecharo / CPFF

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keras bioinfomatics hmmer pfam bioinformatics-tool

Updated Nov 8, 2018
Python

koualab / hmmcompete

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hmmcompete report the best classifier when multiple HMMs are matching the same peptide sequence.

hmm hmmer toxins

Updated Feb 9, 2021
Perl

BioGenies / PlastoGram

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Predicts subplastid localization of proteins along with sequence origin (plastid- or nuclear-encoded).

bioinformatics random-forest r-package hmmer chloroplast plastid subchloroplast-localization subplastid-localization hmm-profile

Updated Apr 14, 2022
R

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