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The Wayback Machine - https://web.archive.org/web/20200914135557/https://github.com/topics/epidemics
Here are
72 public repositories
matching this topic...
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
Updated
Aug 24, 2020
Python
COVID-19 Hospital Impact Model for Epidemics
Updated
May 20, 2020
Python
Mathematical Modeling of Infectious Disease Dynamics
Network Diffusion Library - (for NetworkX and iGraph)
Updated
Jul 30, 2020
Python
Temporal networks in Python. Provides fast tools to analyze temporal contact networks and simulate dynamic processes on them using Gillespie's SSA.
Updated
Aug 7, 2020
Jupyter Notebook
Simulation, visualization, and inference tools for modelling the spread of infectious diseases with Julia
Updated
Aug 17, 2020
Julia
Bayesian fit to SEIR model. An extension to Penn Medicine's CHIME tool.
Updated
Aug 5, 2020
Jupyter Notebook
Epidemics simulation using C
Source code for the EpiEstim app.
Disease propagation ABM generating SIR, severe cases, and R0 over quasi-time.
Updated
Apr 18, 2020
Python
COVID-19 spread shiny dashboard with a forecasting model, countries' trajectories graphs, and cluster analysis tools
Materials of FutureTDM project
Updated
Aug 22, 2017
Jupyter Notebook
MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling
Updated
Aug 14, 2020
Python
Stochastic Cellular Automata epidemic models in Python with 2D simulations
Updated
Feb 24, 2020
Python
Repositório da iniciativa COVID19: Observatório Fluminense, com dados, gráficos e relatórios sobre a evolução pandemia de COVID-19.
Updated
Sep 1, 2020
Jupyter Notebook
Network Diffusion Library REST Service
Updated
Jul 2, 2019
Python
EPIC: a large collection of over 30 million epidemic-related tweets
Epidemic simulation models of complex network.
Networkx implementation of the SIS epidemic model for large and heterogeneous networks
Updated
Jul 26, 2017
Python
tsiR: An R package for time-series Susceptible-Infected-Recovered models of epidemics
Visualization tool for the situation of the COVID-19 pandemic in Romania, with predictions for future numbers.
Provides classes to simulate epidemics on (potentially time-varying) networks using a Gillespie stochastic simulation algorithm or the classic agent based method.
Updated
Oct 22, 2019
Python
Agent based model for epidemics based on the SEIR system.
Updated
Apr 5, 2020
JavaScript
Continuous Time Distance-Based and Network-Based Individual Level Models for Epidemics
Updated
Jan 21, 2020
Fortran
Python toolbox to evaluate graph vulnerability and robustness
Updated
Jun 9, 2020
Python
Predict the coronavirus contagion
Simulaciones de epidemias 👾 en poblaciones con mezcla homogénea 👪 utilizando Agentes Autónomos 🤖
Playable simulation to understand the factors that affect infectious disease spread
Updated
Aug 17, 2020
TypeScript
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Inference of transmission tree from a dated phylogeny
https://cran.r-project.org/web/packages/TransPhylo/vignettes/infer.html