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Juan Nunez-Iglesias jni

214 followers · 9 following · 59

Monash Micro Imaging, Monash University
Melbourne, VIC, Australia
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http://ilovesymposia.com

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Popular repositories

skan

Python module to analyse skeleton (thin object) images

Python 35 13
ray

Automatic segmentation of electron microscopy volumes

Python 25 9
scipy-japan-2019

NumPy tutorial given at SciPy Japan 2019

Jupyter Notebook 22 23
skimage-tutorials

Forked from scikit-image/skimage-tutorials

Scikit-image tutorials

Jupyter Notebook 16 13
streaming-talk

Resources for a talk about streaming data analysis in Python

Python 16 3
llc-tools

Decorators to make it easier to write SciPy LowLevelCallables

Python 16 6

1,654 contributions in the last year

Activity overview

Contributed to napari/napari, scikit-image/scikit-image, scikit-image/skimage-experiments and 5 other repositories

Contribution activity

September 2020

jni/napari-plugin-engine-feedstock Sep 14
jni/pykevoplus Python Sep 6

Created a pull request in napari/napari that received 27 comments

Sep 4

Add test matrix entry to test minimum requirements

Description This was 10x more painful than it needed to be. 😂 But I'm there. 🤞 Type of change Bug-fix (non-breaking change which fixes an issue) …

+60 −7 • 27 comments

Remove Python version requirement for pre-commit Sep 23
Do not ship bundle.py in source distribution Sep 17
Skip bundle test when setup.cfg is missing Sep 3

Fix floodfill segmentation fault Sep 12

Add link to napari-imagej tutorial Sep 10

Add Talley Lambert to maintainers list Sep 6

Declare build dependencies Sep 25
Add instructions to download the entire dataset Sep 25
Replacing data/camera.png due to copyright Sep 23
Remove warnings/explicit settings on feature, restoration Sep 23
Euler number and Crofton perimeter Sep 15
forbid latest version of pyqt Sep 14
trainable segmentation (algorithm + gallery example) Sep 14
Accelerate gamma_adjust for uint8 images Sep 13
Add missing datasets to public API Sep 12
accelerate the masked slic superpixels algorithm Sep 11
PERF: faster Hog computation Sep 10
Fix corrupt floodfill Sep 6
Lddmm registration Sep 6
Deprecate viewer and skivi script, will be removed in 0.20 Sep 6
New: add rolling ball algorithm for background substraction Sep 3

Drop Python 3.6 Sep 27
Fix NameError: name 'Optional' is not defined on Python 3.9 Sep 25
0.3.8 release notes Sep 23
Magic name handle attribute exception Sep 21
Live tiff loader example Sep 17
Add napari.config with yaml-based persistence Sep 15
Update colortransform when building texture Sep 7
change bundle deps approach Sep 7
fix usage nan_to_num to work with numpy 1.16 Sep 3
async-2.5: Vispy Changes Sep 3
Update 0.3.7 release notes Sep 2
async-3: new ChunkCache Sep 1
Restore multiple command-line arguments Sep 1

added meeting notes Sep 23

Add ability to store VolumeVisual data directly in GPU Sep 14

Windows bundled app install instructions Sep 9

Rebuild with new numpy (1.16) Sep 7

Created an issue in napari/napari that received 1 comment

Sep 21

The napari_get_writer hookspec should get more info about the layers

🚀 Feature At a minimum, the data from _get_state would be really useful. For example, some plugins might only be able to save luminance, not RGB, d…

1 comment

Error with certain polygon data Sep 25
Layer._get_state(), or something like it, should be public Sep 21
Add testing optional extras to napari setup.cfg Sep 2
Add python.app to the test matrix Sep 1

Whedon should respond to commands embedded in bigger comments Sep 18

25 contributions in private repositories Sep 7 – Sep 25

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