#
fungi
Here are 47 public repositories matching this topic...
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
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Aug 12, 2021 - Python
creating hybrid-gene phylogenetic trees for diversity analyses
python
diversity
bioinformatics
python3
phylogenetic-trees
phylogenetics
microbiology
microbiome
fungi
fungal
microbial-ecology
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Feb 15, 2019 - Python
A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
genome
protein-sequences
fungi
algae
genomes
jgi
mycocosm
phytozome
archaeplastida
metazome
jgi-genomes
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Jul 20, 2020 - Perl
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
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Mar 9, 2021 - Python
plants
china
animals
fungi
biodiversity
microorganisms
species2000
catalogue-of-life-china
catalogue-of-life-global-checklist
catalogue-of-life-taiwan-checklist
redlist-of-chinese-biodiversity
china-animal-scientific-database
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Jun 11, 2021 - R
Interactive 3D fungi models built with Three.js
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Aug 10, 2021 - JavaScript
A structured controlled vocabulary for the anatomy of fungi
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May 7, 2020 - Makefile
A package for arbuscular mycorrhyzal fungi colonization
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Jul 3, 2020 - R
A spatially explicit trait- and individual-based microbial systems modelling framework
enzyme
biology
trait
fungi
bacteria
ecology
community-ecology
soil
microorganism
individual-based-modelling
dement
dementpy
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Updated
Jul 17, 2021 - Python
CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.
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Jan 24, 2020 - Python
An R-shiny package to analyse and visualise fungal gene expression data
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Aug 11, 2021 - R
WIP & POC: Count Viral and other non-human genome signatures in Human NGS data
bash
docker
bioinformatics
nextflow
genetics
ngs
fungi
bacteria
viral
clinical-research
ngs-analysis
ngs-pipeline
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Aug 15, 2017 - Shell
SCGid, a consensus approach to contig filtering and genome prediction from single-cell sequencing libraries
bioinformatics
python3
bioinformatics-pipeline
fungi
genome-assembly-evaluation
bioinformatics-algorithms
single-cell-genomics
eukaryotes
bioinformatics-tool
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Jul 2, 2021 - Python
Tool to predict eukaryotic signal peptides. In addition, prediction of toxin and fungi signal peptides is also done.
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Feb 22, 2021 - Python
CAN YOU EAT IT is a web application that allows users to identify fungi by location & season.
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Sep 7, 2020 - JavaScript
All scripts and pipelines related to inferring ploidy, hybridization and MAT locus architecture in the lichen symbionts from the genus Letharia
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Jun 4, 2021 - R
Identification of SNPs in EVOL20 strain of A. fumigatus
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Dec 10, 2018 - Shell
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Apr 5, 2021 - Jupyter Notebook
plants
dna
animals
fungi
bacteria
algae
biodiversity
metabarcoding
river
invertebrates
losangeles
archaea
protists
microbes
environmentaldna
vertebrates
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Apr 30, 2021
Ahren Lab page
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Jul 7, 2021
Contains MATLAB scripts used by members of the Glass Lab at UC Berkeley to analyze flow cytometry data.
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May 19, 2019 - MATLAB
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No. This is an enhancement for DESEq2 downstream analysis.
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Use Candida albicans Assembly 21 information to **add gene na