Galaxy Project

Repositories

• tools-iuc

  Tool Shed repositories maintained by the Intergalactic Utilities Commission

  tools usegalaxy toolshed wrappers iuc
  HTML MIT 260 82 168 (4 issues need help) 118 Updated Sep 30, 2020

• usegalaxy-playbook

  Ansible Playbook for usegalaxy.org

  python ansible playbook usegalaxy
  Shell AFL-3.0 15 21 105 (1 issue needs help) 3 Updated Sep 30, 2020

• galaxy

  Data intensive science for everyone.

  docker science workflow bioinformatics pipeline genomics workflow-engine
  Python 649 767 1,301 (130 issues need help) 137 Updated Sep 30, 2020

• tools-devteam

  Contains a set of Galaxy Tools mostly written by the Galaxy Team.

  tools usegalaxy toolshed
  Python 82 34 57 10 Updated Sep 30, 2020

• SARS-CoV-2

  Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures

  usegalaxy 2019-ncov coronavirus covid covid19 covid-2019
  Jupyter Notebook MIT 62 101 7 7 Updated Sep 30, 2020

• galaxy-hub

  Galaxy Community Hub

  community documentation home homepage hub usegalaxy
  Pug 153 41 48 (1 issue needs help) 2 Updated Sep 29, 2020

• planemo

  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

  cli sdk click usegalaxy commonwl
  Python 65 57 219 (14 issues need help) 8 Updated Sep 29, 2020

• galaxykubeman-helm

  Helm chart for Galaxy KubeMan used for deploying Galaxy alongside its dependencies (NFS, CVMFS, and CloudMan)
  Shell MIT 2 0 0 0 Updated Sep 29, 2020

• galaxy-helm

  Minimal setup required to run Galaxy under Kubernetes
  TSQL MIT 26 19 16 8 Updated Sep 29, 2020

• usegalaxy-tools

  usegalaxy.* common tools
  Shell 19 7 6 8 Updated Sep 28, 2020

• training-material

  A collection of Galaxy-related training material

  training tutorial materials ngs metagenomics rnaseq proteomics
  HTML MIT 392 164 90 30 Updated Sep 28, 2020

• screencasts
  MIT 0 0 0 0 Updated Sep 28, 2020

• seek-bzip2
  C 0 0 0 0 Updated Sep 25, 2020

• infrastructure-playbook

  Ansible playbook for managing Galaxy infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
  HTML MIT 10 5 5 7 Updated Sep 25, 2020

• bioblend

  A Python library for interacting with Galaxy and CloudMan APIs

  api api-client usegalaxy cloudman
  Python MIT 87 68 30 4 Updated Sep 24, 2020

• ansible-cvmfs

  An Ansible role for installing and configuring CernVM-FS (CVMFS)
  C 5 5 0 1 Updated Sep 23, 2020

• galaxy-docker-k8s

  An Ansible playbook for building a Galaxy container for Kubernetes.
  Shell MIT 6 4 1 1 Updated Sep 23, 2020

• pulsar

  Distributed job execution application built for Galaxy
  Python Apache-2.0 33 30 51 (5 issues need help) 3 Updated Sep 22, 2020

• video-lectures

  Forked from jxtx/covid-lessons
  CSS 2 0 0 0 Updated Sep 21, 2020

• ansible-galaxy-extras

  Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.
  Shell 36 10 18 6 Updated Sep 21, 2020

• galaxy-flavor-testing

  Travis scripts to unify and ease the testing of Galaxy favors
  Makefile MIT 5 6 2 0 Updated Sep 16, 2020

• galaxy-test-data

  Test data files used by Galaxy.
  HTML 7 1 0 1 Updated Sep 15, 2020

• ansible-common-roles

  A collection of simple Ansible roles for common (mostly system) tasks
  Python MIT 5 12 0 0 Updated Sep 14, 2020

• cloudlaunch

  Easily launch cloud applications.

  python django angular cloud multi-cloud
  Python 36 38 27 0 Updated Sep 11, 2020

• cloudman

  Easily create and manage compute clusters on any Cloud.

  usegalaxy cloudman
  Python 22 31 4 (1 issue needs help) 0 Updated Sep 10, 2020

• gx-it-proxy
  1 package JavaScript 3 1 1 0 Updated Sep 10, 2020

• p4

  Proper Prior Planning Prevents Poorly Performed PRs...Probably

  bot pr pull-requests
  Python 4 2 3 0 Updated Sep 9, 2020

• planemo-monitor

  Planemo scripting to monitor repositories and register tool containers.
  Shell 8 2 2 1 Updated Sep 3, 2020

• ansible-galaxy-toolshed

  An Ansible role for managing a Galaxy (http://galaxyproject.org) Tool Shed server. For a role to install Galaxy itself, see https://github.com/galaxyproject/ansible-galaxy
  Python 2 4 0 0 Updated Sep 1, 2020

• ansible-repos
  1 0 0 0 Updated Aug 25, 2020