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nifti

Here are 45 public repositories matching this topic...

libvips / libvips

Star

A fast image processing library with low memory needs.

c svg pdf imagemagick png cpp jpeg tiff graphicsmagick image-processing gif webp libvips openexr nifti openslide heic pdfium

Updated Sep 17, 2020
C

FNNDSC / ami

Star

AMI Medical Imaging (AMI) JS ToolKit

javascript webgl threejs fs stl dicom medical ami vtk volume-rendering nifti-format dicom-images nrrd nifti trk xtk

Updated Sep 9, 2020
JavaScript

rordenlab / dcm2niix

Star

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

research jpeg dicom neuroscience mri neuroimaging nifti-format mri-images dicom-images nifti jpeg-image dcm nii gz nitrc bids-format dcm2niix mricrogl

Updated Sep 11, 2020
C++

jibikbam / CNN-3D-images-Tensorflow

Star

3D image classification using CNN (Convolutional Neural Network)

neural-network tensorflow cnn medical mri classification convolutional-neural-networks nifti 3d dti

Updated Oct 29, 2019
Python

Washington-University / workbench

Star

Connectome Workbench

c-plus-plus neuroscience mri nifti cifti gifti

Updated Sep 15, 2020
C++

jcreinhold / niftidataset

Star

pytorch dataset class for reading and transforming NIfTI files

pytorch mri nifti

Updated Jul 9, 2020
Jupyter Notebook

JuliaIO / NIfTI.jl

Star

Julia module for reading/writing NIfTI MRI files

julia mri fmri mri-images nifti

Updated Jun 2, 2020
Julia

bioimagesuiteweb / bisweb

Star

This is the repository for the BioImage Suite Web Project

viewer webassembly image-processing medical fmri nifti neuroimaging-analysis nih-brain-initiative

Updated Sep 15, 2020
JavaScript

NIfTI-Image-Converter

alexlaurence / NIfTI-Image-Converter

Star

🖼 A lightweight neuroimaging .nii to .png converter for Matlab and Python users

python opencv converter png matlab medical-imaging neuroimaging convert-images nifti

Updated Jul 8, 2020
MATLAB

bidscoin

Donders-Institute / bidscoin

Star

BIDScoin converts your source-level neuroimaging data to BIDS

Updated Sep 17, 2020
Python

rordenlab / MRIcroGL12

Star

v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.

visualization lazarus opengl glsl dicom volume-rendering nifti bids-format dicom-viewer mricrogl volume-renderings

Updated Aug 16, 2020
Pascal

mfroeling / QMRITools

Star

Processing and visualization tools for quantitative MRI data

visualization mathematica epg nifti elastix diffusion dti ivim dixon diffusion-analysis extended-phase-graphs t2-mapping noise-suppression

Updated Sep 8, 2020
Mathematica

ericspod / Eidolon

Star

Biomedical Visualization and Analysis Framework

visualization python rendering dicom data-visualization acknowledgements medical-imaging pyqt4 data-analysis ogre3d nifti medical-image-computing image-registration brc biomedical mirtk 3d-graphics king-college-london irtk

Updated Jul 15, 2020
Python

Enet4 / nifti-rs

Star

Rust implementation of the NIfTI-1 format

rust medical-imaging neuroimaging nifti-format nifti

Updated Aug 23, 2020
Rust

Washington-University / CiftiLib

Star

C++ Library for reading and writing CIFTI-2 and CIFTI-1 files

c-plus-plus nifti cifti

Updated Sep 10, 2020
C++

neurolabusc / MRIcro

Star

OSX XCode GLSL Volume Render for NIfTI, Bio-Rad Pic, NRRD, Philips, ITK MetaImage, AFNI, Freesurfer, DICOM images.

dicom nifti volume-renderer

Updated Nov 13, 2019
C++

lamyj / dicomifier

Star

A medical image converter

conversion dicom mri medical-imaging nifti bruker

Updated Jun 24, 2020
Python

vsoch / som

Star

Stanford open modules for python

api dicom standards medical-imaging nifti

Updated Dec 11, 2017
Python

CyclotronResearchCentre / bidsme

Star

Flexible bidsificator for multimodal datasets

dicom eeg bids nifti mri-data brainvision

Updated Sep 8, 2020
Python

lukassnoek / nifti2gif

Star

Simple script to transform 3D nifti files to fancy gifs

visualization gif nifti

Updated Nov 30, 2018
Python

MahsaShk / MeshProcessing

Star

Convert binary map to mesh. The binary map is in nifti format and the mesh is in stl file type.

binary convert stl mesh segmentation vtk volume mask nifti surface nii nii2stl binarymap2mesh

Updated Jan 21, 2019
Python

Enet4 / nifti-stream

Star

Simple, stream-based NIfTI-1 reader in JavaScript

javascript reader nifti

Updated Jul 20, 2016
TypeScript

LREN-CHUV / data-tracking

Star

This project contains scripts to extract metadata from DICOM files, NIFTI files and spreadsheets, and import them into a database.

python dicom nifti data-factory

Updated Jul 31, 2018
Python

LREN-CHUV / data-factory-airflow-dags

Star

DAGs adapting the MRI preprocessing pipeline to Airflow

airflow mri neuroimaging nifti data-factory

Updated Feb 5, 2018
Python

Yunke-Li / MIA

Star

NIFTI Image Segment Tool

segment gui nifti

Updated Jun 1, 2020

plwp / Nifti.NET

Star

A basic library for reading, writing and manipulating NIfTI files.

dotnet-standard nifti-format nifti

Updated Feb 5, 2020
C#

dumitrux / navigate-MRI-with-3Dmouse

Star

It displays MRI in 2D and 3D multi-slice views, with easy search and navigation with a 3D mouse.

webgl threejs mri ami nifti mri-brain mri-image 3d-mouse space-navigator

Updated Sep 13, 2020
JavaScript

addisonElliott / nifticlib

Star

Nifticlib is a C I/O library for reading and writing files in the nifti-1 data format. nifti-1 is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI) brain images.

c library medical mri medical-imaging fmri nifti-format mri-images nifti fmri-image-slices

Updated Jul 25, 2017
C

jonathanlurie / ObliqueSurface

Star

display NIfTI/Minc volume along with MNIobj mesh using webgl, threeJS and javascript

javascript webgl neuroscience nifti

Updated Nov 20, 2017
JavaScript

mingrui / GenerateObj

Star

A 3D Slicer Module that 1. uses ROBEX brain extraction to generate mesh.obj; 2. tumor label mask to mesh.obj

visualization unity3d tumor obj medical nifti brain 3d slicer

Updated Nov 23, 2018
Python

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