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README.md

OTU Groupings Workflow Script

Table of Contents

What does this workflow do?
Why is this important?
Quickstart
Installing OTU_Grouping
OTU_Grouping Usage

What does this workflow do?

Why is this important?

Installing OTU_Groupings

Required software

Required R Packages

OTU_Grouping Usage

Example usage

./workflow.sh -b [biom table] -t [threshold]

Required arguments:

Option Description
-b Path of biom table to operate on
-t Threshold for otu low abundance filtering

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