Epistasis Lab at UPenn

Repositories

• penn-ml-benchmarks

  PMLB: A large, curated repository of benchmark datasets for evaluating supervised machine learning algorithms.
  Python MIT 89 518 15 (4 issues need help) 2 Updated Sep 5, 2020

• pennai

  PennAI: AI-Driven Data Science
  Jupyter Notebook GPL-3.0 42 135 59 (3 issues need help) 5 Updated Sep 4, 2020

• pmlb-manuscript

  Manuscript for PMLB v1.0
  HTML 0 0 0 0 Updated Sep 4, 2020

• tpot

  A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

  python data-science machine-learning automation random-forest scikit-learn model-selection
  Python LGPL-3.0 1,305 7,426 173 5 Updated Sep 3, 2020

• bf-utils

  Blackfynn Utilities
  Python 1 3 0 0 Updated Aug 26, 2020

• 3DHeatmap

  3D Heatmap tool in Unity3D. Inst. for Biomed. Informatics, Univ. of PA
  C# MIT 3 1 1 0 Updated Aug 25, 2020

• scikit-rebate

  A scikit-learn-compatible Python implementation of ReBATE, a suite of Relief-based feature selection algorithms for Machine Learning.

  python data-science feature-selection
  Python MIT 53 285 12 (6 issues need help) 1 Updated Aug 21, 2020

• SimpleModelView

  A Unity package for a simplified model-view system to help with code<->UI management.
  ShaderLab MIT 1 1 0 0 Updated Aug 18, 2020

• regression-benchmark

  Forked from athril/regression-benchmark

  A large benchmark study of recent symbolic regression methods
  Jupyter Notebook GPL-3.0 11 11 6 (1 issue needs help) 0 Updated Aug 13, 2020

• Conservation-Machine-Learning

  Conservation Machine Learning
  Python 0 0 0 0 Updated Jul 30, 2020

• rebate-benchmark

  A centralized repository to benchmark ReBATE performance across a variety of parameter settings and datasets.
  Jupyter Notebook MIT 0 4 0 1 Updated Jul 2, 2020

• OMNIREP

  The OMNIREP algorithm: Coevolving encodings and representations

  python automation evolutionary-algorithms coevoluton
  Python GPL-3.0 2 1 0 0 Updated Jun 2, 2020

• SAFE

  The SAFE Algorithm: Solution and Fitness Evolution

  python automation evolutionary-algorithms coevoluton
  Python GPL-3.0 3 1 1 0 Updated Jun 2, 2020

• ellyn

  python-wrapped version of ellen, a linear genetic programming system for symbolic regression and classification.
  C++ 10 29 3 0 Updated May 11, 2020

• scikit-mdr

  A sklearn-compatible Python implementation of Multifactor Dimensionality Reduction (MDR) for feature construction.
  Python MIT 17 112 9 (2 issues need help) 0 Updated Apr 3, 2020

• mrsman

  Medical Record System Management
  Python 1 1 0 0 Updated Apr 1, 2020

• process-ukbb
  0 0 0 0 Updated Mar 30, 2020

• mimic3-benchmarks

  Forked from YerevaNN/mimic3-benchmarks

  Python suite to construct benchmark machine learning datasets from the MIMIC-III clinical database.
  Python MIT 188 3 0 0 Updated Feb 19, 2020

• openmrs-module-fhir

  Forked from djfunksalot/openmrs-module-fhir

  Implements REST and Java APIs to access OpenMRS via FHIR Specification.
  Java 114 1 0 0 Updated Nov 27, 2019

• interpret_ehr

  Interpretation of machine learning predictions for patient outcomes in electronic health records
  Jupyter Notebook GPL-3.0 1 5 0 0 Updated Nov 19, 2019

• malaria-challenge

  The Malaria DREAM Challenge
  Jupyter Notebook 1 0 0 0 Updated Aug 19, 2019

• Brush

  A fast genetic programming system in python
  C++ 1 3 8 0 Updated Jul 23, 2019

• gecco2019-new-benchmarking-standards

  A workshop for improving benchmarking standards in evolutionary computation research.
  MIT 0 0 0 0 Updated Jul 8, 2019

• openmrs-module-coreapps

  Forked from openmrs/openmrs-module-coreapps

  Provides apps for performing the common tasks
  Java 144 0 0 0 Updated Apr 29, 2019

• hibachi

  Data simulation software that creates data sets with particular characteristics
  Python MIT 7 7 0 0 Updated Mar 6, 2019

• TINY

  Tiny Genetic Algorithm (GA) and Tiny Genetic Programming (GP)

  python evolution genetic-algorithm genetic-programming evolutionary-algorithms genetic-algorithms evolutionary-algorithm
  Python 1 1 0 0 Updated Mar 5, 2019

• mimic-code

  Forked from MIT-LCP/mimic-code

  MIMIC Code Repository: Code shared by the research community for the MIMIC-III database
  Jupyter Notebook MIT 907 2 0 0 Updated Oct 25, 2018

• ml-analyst

  Analysis pipeline for quick ML analyses.
  Python GPL-3.0 5 10 0 0 Updated Oct 4, 2018

• ebic

  Forked from athril/ebic

  EBIC - AI-based parallel biclustering algorithm

  machine-learning ai genetic-algorithm artificial-intelligence genetic-programming feature-engineering unsupervised-machine-learning
  C++ MIT 6 14 0 0 Updated Sep 25, 2018

• ReBATE

  Relief Based Algorithms of ReBATE implemented in Python with Cython optimization. This repository is no longer being updated. Please see scikit-rebate.

  data-science cython feature-selection
  Python MIT 9 27 0 0 Updated May 22, 2018