Ma'ayan Lab

Repositories

• FAIRshake
  Python 4 10 27 (1 issue needs help) 7 Updated Jun 18, 2021

• appyter-catalog

  A catalog of appyter notebooks
  Jupyter Notebook 17 12 14 (1 issue needs help) 1 Updated Jun 18, 2021

• appyter

  jinja2-enabled jupyter notebooks
  Jinja 1 15 13 8 Updated Jun 16, 2021

• hypothesis
  CSS MIT 0 0 11 9 Updated Jun 16, 2021

• archs42

  Updated ARCHS4 repository
  JavaScript Apache-2.0 0 0 0 0 Updated Jun 16, 2021

• maayanlab-bioinformatics

  A collection of useful functions for bioinformatics data analysis
  Python Apache-2.0 0 3 0 0 Updated Jun 16, 2021

• EnrichrPythonScripts

  Python Jupyter notebooks for Enrichr species databases
  Jupyter Notebook 0 2 0 0 Updated Jun 15, 2021

• signature-commons-ui

  A front-end UI for demoing API integration
  JavaScript 2 6 32 30 Updated Jun 15, 2021

• signature-commons-metadata-api

  Signature Commons Metadata API
  TypeScript Apache-2.0 0 0 7 9 Updated Jun 14, 2021

• PeerShake

  A community-driven peer review system for bioRxiv.
  HTML Apache-2.0 1 0 0 3 Updated Jun 10, 2021

• Enrichr-Viz-Appyter

  Appyter for enrichr canvases, scatter plots, and Manhattan plots
  Jupyter Notebook 0 0 3 0 Updated Jun 8, 2021

• BioToolStory
  Python Apache-2.0 0 0 7 6 Updated Jun 2, 2021

• biojupies

  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

  cloud bioinformatics rna-seq jupyter pipeline notebook systems-biology
  HTML 27 88 34 24 Updated Jun 1, 2021

• Gelb_Zf

  Scripts and Notebooks used for analyzing the Zebrafish RNA-Seq data from Dr. Gelb
  Jupyter Notebook 0 1 0 1 Updated Jun 1, 2021

• Zika-RNAseq-Pipeline

  An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study

  rna-seq pipeline notebook jupyter-notebook bioinformatics-pipeline rna-seq-analysis
  Jupyter Notebook 57 86 4 1 Updated Jun 1, 2021

• signature-commons-controller

  Preparing and controlling signature commons with existing data / store
  Python Apache-2.0 0 0 0 0 Updated May 28, 2021

• matrixapi

  Load matrix data dynamically from basic H5 file structure through API. Allows basic slicing.
  Python Apache-2.0 0 0 0 0 Updated May 28, 2021

• KEA3web
  HTML 1 0 3 0 Updated May 25, 2021

• FAIRShake-chrome-extension
  HTML 1 0 2 6 Updated May 25, 2021

• FAIRshakeInsignia

  A separate repository for the FAIRshake Insignia Client Javascript Library
  JavaScript 1 0 0 7 Updated May 24, 2021

• Graph-DR

  Benchmarks of dimensionality reduction algorithms

  graph-algorithms graph-theory autoencoder dimensionality-reduction cytoscape force-layout manifold-learning
  Jupyter Notebook 3 1 0 1 Updated May 21, 2021

• clustergrammer

  An interactive heatmap visualization built using D3.js

  visualization d3 python clustering biology heatmap jupyter-notebook
  JavaScript MIT 76 189 20 6 Updated May 11, 2021

• enrichmentAPI
  Java 2 1 3 0 Updated May 11, 2021

• signature-commons

  A docker-compose for deploying the entire signature-commons stack
  Shell Apache-2.0 0 2 0 8 Updated May 11, 2021

• signature-commons-schema

  JSON-Schema validators for signature commons entities
  1 package TypeScript 1 0 2 1 Updated May 8, 2021

• scAVI

  Single-cell RNA-seq data analysis and visualization
  Python Apache-2.0 1 1 10 9 Updated May 6, 2021

• geo2enrichr

  A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.
  Python 7 10 1 3 Updated May 6, 2021

• L1000FWD

  Large-scale visualization of drug-induced transcriptomic signatures

  threejs data-visualization drug-discovery
  JavaScript 4 3 0 8 Updated May 6, 2021

• clustergrammer-widget

  The Clustergrammer interactive Jupyter notebook widget

  visualization python clustering pandas-dataframe jupyter-notebook jupyter-widget
  Jupyter Notebook MIT 24 38 10 1 Updated May 6, 2021

• clustergrammer-py

  A python module for the clustergrammer matrix visualization project that creates the JSON object for the front-end JavaScript portion of Clustergrammer.
  Jupyter Notebook MIT 13 11 10 2 Updated May 5, 2021