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Sep 16, 2020 - Scala
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ga4gh
Here are 53 public repositories matching this topic...
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
docker
application
workflow
cloud
bioinformatics
scala
executor
hpc
containers
wdl
common-workflow-language
ga4gh
cwl
workflow-description-language
workflow-execution
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
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Apr 7, 2020 - HTML
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
python
bioinformatics
server
genomics
health
variants
global
rna
genome-annotation
ga4gh
reference-implementation
alliance
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Jan 24, 2018 - Python
Funnel is a toolkit for distributed task execution via a simple, standard API.
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Sep 11, 2020 - Go
Repository for the GA4GH inlined phenopacket schema
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Sep 17, 2020 - Java
A GA4GH Task Execution Service (TES) compatible implementation for Azure Compute
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May 11, 2019 - Python
Code examples for working with web based bioinformatics APIs
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Feb 17, 2017 - Jupyter Notebook
Repository for the Google Summer of Code for the Reference Retrieval API
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Oct 21, 2019 - Python
A Bioconductor package for accessing GA4GH API data servers
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Apr 17, 2017 - R
Used to validate APIs that implement https://github.com/ga4gh/tool-registry-schemas
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Sep 15, 2020 - Python
Workflow for GA4GH/DREAM challenge (phase 2)
workflow
pipeline
ga4gh
cwl
cwl-workflow
cwltool
biowardrobe
cwl-airflow
ga4gh-challenge
dream-challenge
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Jun 2, 2020 - Common Workflow Language
blankdots
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Nov 20, 2019
Proposed solution
Have a info in the response that specifies if the data in the beacon is 0-based or 1-based.
While the recommendation for the API is to be 0-based ga4gh-beacon/specification#251 , that might not always be the case. Hence we will add some information to the API that a beacon deployment can specify what kind of data it has.
This is GA4GH relate
Implementation of tool-registry-schema with experimental write API support
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May 23, 2019 - Java
Python backend for Biocontainers (Flask + MongoDB)
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Sep 9, 2020 - Python
General Purpose OIDC Client (with added ELIXIR AAI integration as default)
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Sep 15, 2020 - Python
Schema definitions for the Global Alliance for Genomics and Health non-sequence objects
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Sep 14, 2018
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@melissacline recommended a quick start guide for using VRS and vr-python. For now, I'll park that request here in vr-python, but it might be that the notebooks or documentation should migrate to vr-spec. We can decide that later.