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blast-searches

Here are 10 public repositories matching this topic...

seqan / lambda

LAMBDA – the Local Aligner for Massive Biological DatA

bioinformatics high-performance cpp14 metagenomics alignment protein-sequences ncbi-taxonomy blast blast-searches seqan

Updated Nov 7, 2021
C++

drostlab / orthologr

Genome wide orthology inference and dNdS estimation

r genomics species blast comparative-genomics proteome blast-searches orthology-inference comparative-genomics-studies sequence-alignments comparative dnds-estimation codon-alignment sequence-alignment biomartr entire-genomes orthologous-genes comparing-genomes genomics-studies retrieve-genomes

Updated Nov 8, 2021
R

drostlab / metablastr

BLAST Sequence Searches with R

protein species blast blast-searches nucleotide biological-sequences blasting blastn blast-search sequence-diversity biomartr blast-hits

Updated Dec 6, 2021
R

Azure / azure-hpc

Microsoft Azure HPC & Big Compute

bioinformatics research blast azure-storage blast-searches lifescience blastn blast-search azure-hpc

Updated Aug 18, 2019
JavaScript

DIGS-tool

giffordlabcvr / DIGS-tool

Database-Integrated Genome Screening (DIGS) tool. Explore genomes interactively using BLAST and a relational database.

data-mining evolution genome-annotation comparative-genomics blast-searches transposable-elements similarity-search molecular-genetics sequence-similarity paleovirology

Updated Dec 13, 2021
Perl

pgdurand / BlastViewer

This package contains the BLAST Viewer Tool.

bioinformatics-pipeline gene-ontology blast-searches interproscan

Updated Dec 7, 2021
Java

pcantalupo / annotater

Annotate sequences by BLAST/Rapsearch including NCBI taxonomy information

taxonomy ncbi-taxonomy blast taxonomic-classifications blast-searches ncbi-blast

Updated Nov 12, 2020
Perl

pranavkhurana / Seabuck-thorn

This is a simple implementation of NCBI's BLAST(Basic Local Alignment Search Tool) url API in PHP. Blast finds regions of similarity between biological sequences.

php blast-searches ncbi-blast blastn blast-url-api seabuck-thorn

Updated Jul 12, 2017
PHP

blinard-BIOINFO / NCBITaxonomy

Tools to build a copy of the NCBI Taxonomy database in a local SQL schema and query it via a Java package.

taxonomy blast taxid blast-searches ncbi species-lists

Updated Sep 2, 2020
Java

ifremer-bioinformatics / BLAST-PLAST-bench

Scripts to run benchmarks of BLAST and PLAST on a supercomputer

supercomputer protein-sequences blast-searches blastn plast blastx blastp megablast gene-sequences

Updated Jan 30, 2018
Shell

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