seung-lab

Repositories

• compressedseg

  Forked from janelia-flyem/compressedseg

  compressed_segmentation for Neuroglancer volumes. This is the PyPI package fork.

  compression segmentation connectomics compression-library neuroglancer
  C++ 3 3 0 0 Updated Sep 17, 2020

• MicronsBinder

  Forked from AllenInstitute/MicronsBinder

  A collection of notebooks to provide examples of using Microns-explorer.org datasets
  Jupyter Notebook 1 0 0 0 Updated Sep 17, 2020

• SEAMLeSS

  SEAMLeSS (under active development)
  Python MIT 1 5 4 9 Updated Sep 16, 2020

• neuroglancer

  Forked from google/neuroglancer

  WebGL-based viewer for volumetric data
  TypeScript Apache-2.0 171 14 55 9 Updated Sep 16, 2020

• cloud-volume

  Read and write Neuroglancer datasets programmatically.

  python cloud big-data serverless numpy matrix s3
  Python BSD-3-Clause 25 51 38 4 Updated Sep 16, 2020

• PyChunkedGraph

  Chunked graph structure used for human proof-reading in Python
  Python GPL-3.0 3 9 13 0 Updated Sep 16, 2020

• chunkflow

  Compose chunk operators to create pipeline for distributed computation

  image-processing chunk image-segmentation connectome volumetric-data 3d-images convnet-inference
  Python Apache-2.0 5 15 10 1 Updated Sep 14, 2020

• ng-extend
  Vue 0 0 3 5 Updated Sep 14, 2020

• flywire-lp
  HTML 0 0 0 0 Updated Sep 14, 2020

• DracoPy

  Python wrapper for Google's Draco mesh compression library

  python compression mesh draco
  Python Apache-2.0 4 8 2 1 Updated Sep 14, 2020

• DeepEM

  Deep Learning for EM Connectomics
  Python MIT 5 2 1 1 Updated Sep 14, 2020

• seuron

  Forked from wongwill86/air-tasks
  Python MIT 6 0 0 0 Updated Sep 13, 2020

• corgie

  Forked from scottwedge/corgie
  Python Apache-2.0 3 0 0 0 Updated Sep 12, 2020

• cloud-files

  Threaded client for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

  client key-value s3 concurrency parallel google-cloud-storage bucket
  Python BSD-3-Clause 0 8 4 1 Updated Sep 12, 2020

• DynamicAnnotationDB
  Python 1 1 4 0 Updated Sep 10, 2020

• seuron_examples

  Forked from wongwill86/examples

  InfraKit examples
  Shell Apache-2.0 14 0 0 0 Updated Sep 10, 2020

• AnnotationFrameworkClient
  Python 0 0 0 2 Updated Sep 10, 2020

• connected-components-3d

  Connected components on multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants.

  python algorithm cpp numpy cython image-processing neighborhood
  C++ GPL-3.0 11 70 5 4 Updated Sep 9, 2020

• dijkstra3d

  Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D Image Volumes

  python cpp pathfinding path-planning a-star dijkstra 3d
  C++ GPL-3.0 4 19 2 0 Updated Sep 9, 2020

• explore-page

  Landing page Single Page App for Eyewire
  JavaScript 0 0 5 2 Updated Sep 4, 2020

• NeuroglancerAnnotationUI
  Python Apache-2.0 0 1 0 0 Updated Sep 4, 2020

• igneous

  Python cloud pipeline for Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Remapping, and more.

  visualization python docker kubernetes cloud python3 meshing
  Python GPL-3.0 12 13 8 1 Updated Sep 1, 2020

• python-task-queue

  Threaded task queue with timed leasing of tasks. Implementations for SQS and local filesystem.

  python filesystem sqs sqs-queue task-scheduler task-queue cloud-queues
  Python BSD-3-Clause 6 7 3 1 Updated Sep 1, 2020

• fastremap

  Remap, mask, renumber, unique, and in-place transposition of 3D labeled images.

  python numpy cython looping python3 remap biomedical-image-processing
  Python LGPL-3.0 1 10 1 0 Updated Sep 1, 2020

• python-storage

  Forked from googleapis/python-storage
  Python Apache-2.0 24 0 0 0 Updated Sep 2, 2020

• middle_auth_client
  Python 0 0 0 0 Updated Aug 28, 2020

• torchfields

  A PyTorch add-on for working with image mappings and displacement fields, including Spatial Transformers
  Python MIT 0 14 0 3 Updated Aug 26, 2020

• AnnotationFrameworkInfoService
  Python 0 0 1 1 Updated Aug 26, 2020

• python-crc32c

  Forked from googleapis/python-crc32c
  Python Apache-2.0 7 0 0 0 Updated Aug 21, 2020

• EMAnnotationSchemas

  Repository to hold schemas for annotations of volumetric imaging data focused on EM
  Python MIT 2 1 4 1 Updated Aug 20, 2020