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The Wayback Machine - https://web.archive.org/web/20200813182602/https://github.com/topics/genomics
Here are
1,178 public repositories
matching this topic...
Official git repository for Biopython (originally converted from CVS)
Updated
Aug 10, 2020
Python
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Updated
Jul 24, 2020
Python
A collaboratively written review paper on deep learning, genomics, and precision medicine
Updated
Aug 12, 2020
HTML
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Official code repository for GATK versions 4 and up
Updated
Aug 13, 2020
Java
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Data intensive science for everyone.
Updated
Aug 13, 2020
Python
tools for working with genome variation graphs
Scalable genomic data analysis.
Updated
Aug 13, 2020
Scala
Python and C++ code for reading and writing genomics data.
Scripts to download genomes from the NCBI FTP servers
Updated
Aug 13, 2020
Python
Tools to process and analyze deep sequencing data.
Updated
Aug 11, 2020
Python
📖 🔬 ☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Updated
Aug 12, 2020
Java
C++ library and cmdline tools for parsing and manipulating VCF files
A modern genome browser built with JavaScript and HTML5.
Updated
Aug 13, 2020
JavaScript
Python library to handle Gene Ontology (GO) terms
Updated
Jul 18, 2020
Python
Python library to facilitate genome assembly, annotation and comparative genomics
Updated
Aug 9, 2020
Python
The next version of bwa-mem
A fast and sensitive gapped read aligner
Java utilities for Bioinformatics
Ultra-fast and memory-efficient (meta-)genome assembler
Efficient pythonic random access to fasta subsequences
Updated
Aug 6, 2020
Python
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
Updated
May 27, 2020
Julia
An open source platform for managing and analyzing biomedical big data
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Updated
Jul 11, 2020
Python
JavaScript VisualizationTools
annotate a VCF with other VCFs/BEDs/tabixed files
A comprehensive tutorial about GWAS and PRS
Haplotype VCF comparison tools
A high-performance, Pythonic language for bioinformatics
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