Institute for Disease Modeling

Repositories

• synthpops

  Create synthetic populations for COVID-19 epidemic analyses.

  networks covid-19
  Python 9 9 0 3 Updated Aug 11, 2020

• EMOD_rakai

  Modeling incidence declines in Rakai, Uganda using EMOD-HIV
  Python 0 0 0 0 Updated Aug 11, 2020

• COVID-19

  Forked from midas-network/COVID-19

  2019 novel coronavirus repository

  covid-19
  TeX 205 10 0 0 Updated Aug 10, 2020

• pycms

  Expose CMS functionality to Python via Python.NET

  python cms simulation idm mse stochastic
  Scheme 2 0 12 0 Updated Aug 6, 2020

• vis-tools

  Visualization Toolkit
  JavaScript 6 10 0 2 Updated Jul 30, 2020

• covasim

  COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions

  covid-19
  1 package Python 77 90 27 3 Updated Jul 29, 2020

• selvaraj_vector_genetics_2020
  Python 0 0 0 0 Updated Jul 5, 2020

• kingcounty_rainier

  RAINIER applied to COVID-19 data in King County, WA from the Washington Disease Reporting System
  Python 1 1 1 1 Updated Jun 10, 2020

• cookiecutter-idmtools-task

  Task Template Project for IDM Tools
  Python 0 0 0 0 Updated May 27, 2020

• covid-health-systems

  Simulate various COVID-19 health system capacity scenarios

  model health-system covid-19
  R 4 9 3 0 Updated Apr 16, 2020

• COVID-public

  Repo to share open work on the COVID-19 outbreak

  covid-19
  HTML 8 15 0 0 Updated Apr 10, 2020

• ckan

  Forked from ckan/ckan

  This is a fork of the official CKAN repository. This fork is being used for internal IDM purposes and not for public distribution. CKAN is an open-source DMS (data management system) for powering data hubs and data portals. CKAN makes it easy to publish, share and use data. It powers datahub.io, catalog.data.gov and europeandataportal.eu/data/en…

  dse idm
  Python 1,456 0 52 (1 issue needs help) 0 Updated Feb 22, 2020

• EMOD-InputData

  Full set of input data files for use with the EMOD disease transmission model
  Python 2 2 1 0 Updated Feb 20, 2020

• IDM-CMS

  IDM compartmental modeling software (CMS)

  cms simulation idm mse stochastic
  C# 7 4 8 0 Updated Feb 20, 2020

• docs-emod-scenarios

  Tutorial materials as referenced in IDM's documentation for EMOD, an agent-based disease dynamics model.

  documentation modeling idm tutorials epidemiology malaria hiv
  Python 1 1 2 0 Updated Nov 25, 2019

• SeasonalityStudyOfGEMSdata

  Data and code associated with "The seasonality of diarrheal pathogens: A retrospective study of seven sites over three years"
  MATLAB 0 2 0 0 Updated Jun 10, 2019

• selvaraj_systemic_insecticides_2019

  This repo is intended for the malaria team to store code for a paper being submitted for review.
  Python 0 0 0 0 Updated Apr 23, 2019

• EMOD

  Source files for building the IDM EMOD disease transmission model.

  modeling idm stochastic epidemiology malaria hiv
  C++ 31 66 4 0 Updated Apr 10, 2019

• ol3

  https://github.com/mnorkin/ol3
  JavaScript 0 0 0 0 Updated Mar 28, 2019

• Nigeria-Family-Planning-Paper

  idm fp nigeria
  R 0 0 0 0 Updated Dec 21, 2018

• HIV-plotting-and-utils

  Plotting scripts, trajectory selection/resampling scripts, and other non-analyzer utilities for HIV
  R 0 0 0 0 Updated Oct 13, 2017

• TransmissionSankey

  Look at flows of where infections come from and go to, cross-referencing EMOD log files

  idm kenya hiv
  HTML 1 0 0 0 Updated Sep 15, 2017

• EMOD-Typhoid

  IDM typhoid model source code for ASTMH November 2016

  idm typhoid
  C++ 1 1 0 1 Updated Apr 13, 2017

• Paper-Repository
  MATLAB 0 0 0 0 Updated Aug 25, 2016

• EVD

  Data, analysis, visualization of 2014-2015 West African Ebola outbreak

  idm ebola
  Python 3 1 0 0 Updated Jul 29, 2016

• HIV-MetaAnalysis-Shiny
  R 1 1 0 0 Updated May 11, 2016

• bonobo-js

  Forked from f5io/bonobo-js

  A work-monkey to do your dirty business.
  JavaScript 3 0 0 0 Updated Jun 16, 2015

• Climate

  IDM climate files for Senegal 2013

  weather idm senegal
  Python 4 2 0 0 Updated Sep 18, 2014