One Codex

Repositories

• docker-onecodex-notebook

  Docker image with a Jupyter notebook environment for embedded use on One Codex
  HTML MIT 0 2 3 0 Updated Nov 18, 2020

• onecodex

  Command line interface and Python client library for the One Codex API
  Python MIT 8 15 27 0 Updated Nov 6, 2020

• needletail

  Fast FASTX parsing and k-mer methods in Rust
  Rust MIT 10 70 8 1 Updated Nov 2, 2020

• assembly-annotation-tools
  Dockerfile 0 0 0 0 Updated Aug 28, 2020

• taxonomy

  Python and Rust library for loading, saving, and manipulating taxonomic trees
  Rust MIT 1 14 8 0 Updated Aug 17, 2020

• laptop

  Forked from thoughtbot/laptop

  A shell script to set up a macOS laptop for web and mobile development.
  Shell MIT 1,843 0 0 0 Updated Jul 24, 2020

• finch-rs

  A genomic minhashing implementation in Rust
  Rust MIT 3 55 15 0 Updated Jun 23, 2020

• template-python

  Template Python repository
  Makefile 0 0 0 0 Updated May 6, 2020

• chrononaut

  A history mixin with audit logging, record locking, and time travel for FlaskSQLAlchemy

  python flask postgres sqlalchemy flask-sqlalchemy
  Python MIT 3 15 1 0 Updated Apr 15, 2020

• sars-cov-2

  SARS-CoV-2 variant calling and consensus assembly pipeline
  Jupyter Notebook MIT 1 11 4 0 Updated Apr 2, 2020

• altair_saver

  Forked from altair-viz/altair_saver

  Altair extension for saving charts in a variety of formats.
  Jupyter Notebook BSD-3-Clause 11 0 0 0 Updated Mar 29, 2020

• public-dockerfiles

  Public Dockerfiles
  Dockerfile 0 0 0 0 Updated Mar 16, 2020

• homebrew-bio

  Forked from brewsci/homebrew-bio

  🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
  Ruby 81 0 0 0 Updated Feb 21, 2020

• potion

  Forked from biosustain/potion

  Flask-Potion is a RESTful API framework for Flask and SQLAlchemy, Peewee or MongoEngine
  Python 52 0 0 0 Updated Feb 8, 2020

• docker-unicycler

  Docker container for the Unicycler hybrid assembler
  Dockerfile 2 2 0 1 Updated Dec 16, 2019

• Unicycler

  Forked from rrwick/Unicycler

  hybrid assembly pipeline for bacterial genomes
  C++ GPL-3.0 83 0 0 0 Updated Dec 12, 2019

• docker-shovill

  Docker container for tseemann/shovill
  Dockerfile 0 0 0 0 Updated Oct 16, 2019

• onpremise

  Forked from getsentry/onpremise

  Sentry On-Premise setup
  Python Apache-2.0 1,043 0 0 0 Updated Jul 23, 2019

• rq-dashboard

  Forked from Parallels/rq-dashboard

  Flask-based web front-end for monitoring RQ queues.
  Python 235 0 0 0 Updated Jun 18, 2019

• pyo3-pack

  Forked from PyO3/maturin

  Build and publish crates with pyo3, rust-cpython and cffi bindings as well as rust binaries as python packages
  Rust 48 2 0 0 Updated Jun 6, 2019

• graphql-server-core

  Forked from graphql-python/graphql-server

  This is the core package for using GraphQL in a custom server easily
  Python MIT 42 0 0 0 Updated May 24, 2019

• taxonomy-rs Archived

  Load, save, and manipulate taxonomic trees
  Rust MIT 1 3 0 0 Updated Apr 30, 2019

• nim-bitarray

  Bitarray implementation in Nim
  Nim MIT 3 10 0 0 Updated Apr 8, 2019

• docker-onecodex-cli

  DEPRECATED: Old image with One Codex CLI - please install directly now
  Python 0 0 0 0 Updated Mar 18, 2019

• pako

  Forked from nodeca/pako

  high speed zlib port to javascript, works in browser & node.js
  JavaScript MIT 601 0 0 0 Updated Feb 28, 2019

• ipyvega

  Forked from vega/ipyvega

  IPython/Jupyter notebook module for Vega and Vega-Lite
  Jupyter Notebook BSD-3-Clause 44 0 0 0 Updated Jan 31, 2019

• bacillus-anthracis-panel

  Description of One Codex B. anthracis marker panel design and testing
  HTML CC-BY-4.0 0 0 0 0 Updated Jan 3, 2019

• docker-scipy-notebook

  Jupyter notebook scipy image
  Python MIT 0 0 0 0 Updated Dec 13, 2018

• potion-client

  Forked from biosustain/potion-client
  Python MIT 9 0 0 0 Updated Nov 15, 2018

• paper-themes

  Forked from PeerJ/paper-themes

  CSS themes for research articles
  CSS 2 0 0 0 Updated Sep 1, 2018