The Wayback Machine - https://web.archive.org/web/20201108145231/https://github.com/topics/network-inference

#

network-inference

Here are 34 public repositories matching this topic...

saeyslab / nichenetr

Star

NicheNet: predict active ligand-target links between interacting cells

rna-seq gene-expression network-inference data-integration single-cell-rna-seq single-cell-omics intercellular-communication ligand-receptor ligand-target

Updated Aug 17, 2020
R

jchiquet / PLNmodels

Star

A collection of Poisson lognormal models for multivariate count data analysis

network-inference pca r-package multivariate-analysis count-data poisson-lognormal-model

Updated Sep 10, 2020
R

lingfeiwang / findr

Star

Fast Inference of Networks from Directed Regulations

systems-biology directed-graph network-inference bayesian-network gene-regulation dag

Updated Jul 14, 2020
C

fdtomasi / regain

Star

REGAIN (Regularised Graphical Inference)

machine-learning time-series scikit-learn network-inference graphical-models latent-variables

Updated Aug 17, 2020
Jupyter Notebook

mims-harvard / fusenet

Star

Network inference by fusing data from diverse distributions

network-inference heterogeneous-network graphical-models exponential-family diverse-distributions fusing-data

Updated Nov 25, 2016
Python

networkinference / ARNI

Star

Algorithm for Revealing Network Interactions (ARNI) from nonlinear collective dynamics

time-series network inference network-inference dynamical-systems reconstruction oscillator network-reconstruction inferred-interactions reconstructing-networks

Updated Jan 29, 2018
HTML

hyu-ub / BayesNetBP

Star

R package for inference in Bayesian networks.

network-inference bayesian-networks probabilistic-graphical-models conditional-gaussian

Updated Apr 10, 2020
R

GemsLab / hashing-based-network-discovery

Star

Hashing-based network discovery from time series

correlation time-series scalability lsh network-inference locality-sensitive-hashing network-discovery

Updated Jun 17, 2020
Python

fabian-sp / GGLasso

Star

Implementations for solving the Group and Fused Graphical Lasso problem

optimization network-inference graphical-models latent-variable-models graphical-lasso

Updated Oct 1, 2020
Python

Roy-lab / merlin-p

Star

A prior-based integrative framework for functional transcriptional regulatory network inference (Fotuhi Siahpirani & Roy, Nucleic Acids Research 2017)

clustering network-inference

Updated Oct 20, 2018
C

biolab / red

Star

Inference of Epistatic Gene Networks

network-inference epistasis genetic-interactions mutant-data

Updated Aug 25, 2014
Python

CABSEL / SINCERITIES

Star

SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression profiles.

network-inference single-cell-analysis

Updated Oct 16, 2017

GrossTor / IdentiFlow

Star

Identifiability and experimental design in perturbation studies

reverse-engineering systems-biology network-inference experimental-design identifiability maximum-flow matroid

Updated Sep 25, 2020
Python

tallulandrews / scTarNet

Star

network-inference single-cell-rna-seq

Updated Sep 10, 2018
R

le-ander / MSc_Bioinfo-Network_Inference

Star

Network inference for gene expression using gradient matching. Final research project as part of the MSc in Bioinformatics and Theorectical Systems Biology at Imperial College London 2016/2017.

bioinformatics julia systems-biology gene-expression network-inference gaussian-processes gradient-matching

Updated Sep 21, 2020
Julia

networkinference / ESL

Star

Network inference via Event Space Linearization (ESL)

network inference network-inference neural-networks spiking-neural-networks reconstruction spikes model-free network-reconstruction spiking-networks

Updated Aug 4, 2018
Python

Roy-lab / mrtle

Star

Multi-species regulatory network learning (Koch et al, Cell Systems 2017)

network-inference multi-task-learning

Updated Jul 8, 2017
C

callahantiff / owl-nets

Star

Transforming OWL for statistical learning

semantic-web network-inference knowledge-graph ontologies web-ontology-language sparql-query hacktoberfest

Updated Oct 1, 2020
Python

CABSEL / TRaCE

Star

Transitive Reduction and Closure Ensemble

network-inference

Updated Mar 8, 2018
MATLAB

paubellot / netbenchmark

Star

This package implements a benchmarking of several gene network inference algorithms from gene expression data

benchmark network gene-expression network-inference grn graph-and-network

Updated May 17, 2020
R

plliao / FASTEN

Star

FASTEN: the software to influence multiple diffusion networks using the first-hand sharing pattern.

machine-learning social-network network-inference

Updated Jun 3, 2017
C++

Roy-lab / merlin

Star

Regulatory network inference with module prior

clustering network-inference

Updated Oct 9, 2020
C

pdesrosiers / GrangerCausality

Star

MATLAB module for assessing the causal links between time series

network-inference computational-neuroscience timeseries-analysis

Updated Jun 19, 2018
MATLAB

Roy-lab / integrative_networks

Star

Code for Chasman et al, PLOS Comp Biol 2016.

network-inference network-analysis

Updated Jul 10, 2017
GAMS

newTypeGeek / Network-Reconstruction

Star

Effect of hidden nodes on the reconstruction of bidirectional networks

time-series clustering network inference network-inference dynamical-systems stochastic-differential-equations covariance-matrix inverse-covariance network-reconstruction hidden-nodes bidirectional-networks

Updated Jan 23, 2020
Python

Davide95 / msc_thesis

Star

Learning relational models from networked data on the web

nlp graphs scraping network-inference topic-modeling

Updated Oct 24, 2020
Jupyter Notebook

xiaohan2012 / active-infection-source-finding

Star

machine-learning network-inference steiner-tree active-learning online-learning information-cascade probabilistic-model

Updated Jan 31, 2018
Jupyter Notebook

lucamasera / pyPCalg

Star

Python wrapper of the PC++ skeleton function

network-inference causal-inference

Updated Jun 19, 2018
C++

cpauvert / PLNnetwork-workflow

Star

Infer network from count data within Snakemake using a sparse Poisson lognormal model (PLNnetwork)

snakemake network-inference snakemake-workflows microbiome-analysis count-data

Updated Nov 6, 2020
R

Roy-lab / MERLIN-P-TFA_old_code

Star

network-inference

Updated Aug 29, 2017
C

Improve this page

Add a description, image, and links to the network-inference topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the network-inference topic, visit your repo's landing page and select "manage topics."

You can’t perform that action at this time.