imodpasteur

Repositories

• ZOLA-3D

  Zernike Optimized Localization Algorithm for 3D single molecule localizations
  Java GPL-3.0 3 10 4 0 Updated Mar 10, 2020

• ANNA-PALM

  Accelerating Single Molecule Localization Microscopy with Deep Learning
  Python 12 31 11 2 Updated Jan 28, 2020

• Anet-ImageJ

  An ImageJ/FIJI plugin for running Anet, for processing images with ANNA-PALM and other models in ImageJ/FIJI.
  Java GPL-3.0 1 4 0 0 Updated Jan 21, 2020

• Brightfield-Drift-Correction-3D

  Acquire bright field images along with the super resolution data and use it to track drift in 3D with nanometer precision!

  localization trace drift microscopy cross-correlation brighfield
  Python MIT 0 8 1 0 Updated May 14, 2019

• shareLoc.xyz

  A platform for sharing localization microscopy data.
  JavaScript MIT 0 0 2 0 Updated Apr 4, 2019

• smlm-file-format

  A portable and extendable file format for storing and sharing localization microscopy data.
  Java MIT 0 2 0 0 Updated Aug 23, 2018

• ArduinoCompressedSensing

  A compressed sensing plugin for MicroManager to perform compressed sensing acquisitions
  C++ 0 2 0 0 Updated Apr 9, 2017

• pySPIRALTAP

  Sparse Poisson Intensity Reconstruction ALgorithms
  Jupyter Notebook MIT 4 5 0 0 Updated Apr 2, 2017

• CompressedSensingMicroscopy3D

  Reconstruction notebooks for the paper "Simple 3D compressed sensing scheme for faster and less phototoxic fluorescence microscopy imaging"
  Jupyter Notebook 1 7 0 0 Updated Apr 2, 2017

• lutorpy

  Forked from scoder/lupa

  Use torch in python for deep learning.
  Python MIT 93 232 21 (1 issue needs help) 0 Updated Feb 9, 2017

• DeepCell

  Forked from CovertLab/DeepCell
  Python 25 0 0 0 Updated Nov 5, 2016

• keras

  Forked from keras-team/keras

  Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on Theano and TensorFlow.
  Python 18,524 6 0 0 Updated Nov 4, 2016

• TaggedSpot2CSV

  Convert Tagged Spot File (.tsf from MicroManager) to Comma Separated Values file(.csv for thunderSTORM)
  Protocol Buffer MIT 0 0 0 0 Updated Oct 2, 2016

• mnist-deep-learning-tutorial
  Jupyter Notebook 1 2 0 0 Updated Sep 29, 2016

• RNNtrajAnalysis
  Jupyter Notebook 0 1 0 0 Updated Sep 29, 2016

• thunderstorm

  Forked from zitmen/thunderstorm

  ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging
  Java GPL-3.0 30 0 0 0 Updated Mar 4, 2016

• sagenb

  Forked from sagemath/sagenb

  Sage Notebook for super-resolution imaging automation
  JavaScript 99 1 10 0 Updated Mar 10, 2015

• QuickPALM

  A 3D real-time PALM/STORM image processing plugin for ImageJ
  Java GPL-3.0 0 0 0 0 Updated Feb 3, 2015