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The Wayback Machine - https://web.archive.org/web/20210418214926/https://github.com/topics/snps
Here are
96 public repositories
matching this topic...
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Updated
Sep 21, 2020
Python
✂️ ⚡ Rapid haploid variant calling and core genome alignment
Updated
Jan 20, 2021
Perl
Strelka2 germline and somatic small variant caller
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Updated
Mar 18, 2021
Python
tools for genetic genealogy and the analysis of consumer DNA test results
Updated
Apr 15, 2021
Python
A fast 23andMe DNA parser and inferrer for Python
This is the code behind the
www.impute.me site. It contains algorithms for personal genome analysis, including imputation and polygenic risk score calculation
A fast 23andMe genome text file parser, now superseded by arv
Updated
Nov 12, 2017
Python
An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies
Updated
Apr 5, 2021
Python
Wrapper to a number of SNP web APIs
tools for reading, writing, merging, and remapping SNPs
Updated
Apr 17, 2021
Python
Pan-genomic sequence analysis
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
🔖 Get SNP proxies from the 1000 Genomes Project.
Datastructures and algorithms for working with genetic variation
Updated
Sep 11, 2020
Julia
Compressed storage for SNP data
Updated
Mar 12, 2021
Julia
Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Updated
Dec 16, 2019
TypeScript
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
Updated
Apr 16, 2021
HTML
Collection of Python scripts for parsing/analyses of RAD-seq data
Updated
Apr 6, 2021
Python
Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
An Efficient Swiss Army Knife for Population Genomic Analyses in R
An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions
A haplotype analysis toolkit for natural variation study.
Updated
Feb 14, 2020
Python
Population Genetics in Julia
Updated
Apr 13, 2021
Julia
A simple python library to identify the most likely strain from the population
Updated
Apr 2, 2021
Python
Scripts for file processing and analysis in phylogenetics and phylogeography
Updated
Jan 6, 2021
Shell
map and call next generation genomic sequencing
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