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ftk
Factorization of the translation kernel for fast rigid image alignment
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SlurmUtil
slurm monitoring tools and interface
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cufinufft
Nonuniform fast Fourier transforms of types 1 and 2, in 2D and 3D, on the GPU
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kachery-p2p
Peer-to-peer content-addressable file sharing using kachery and hyperswarm
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finufft
Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3
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bio-nica
Code for reproducing the experiments in the paper "A biologically plausible single-layer network for blind nonnegative source separation"
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nix-modules
nixpkgs-based module builds of cluster packages
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Bio-RRR
Demo code for NeurIPS 2020 paper.
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astrosims
A simple elasticsearch frontend for serving astrophysical simulation catalog data
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bio-sfa
Code for reproducing the experiment from the paper "A biologically plausible neural network for Slow Feature Analysis"
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inferelator
Inferelator_ng fork to handle single-cell RNA sequencing data
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deepblast
Neural Networks for Protein Sequence Alignment
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spike-front
Front end tool for benchmarking spike sorting algorithms.
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indico-slack-bot
Bot that sends daily updates of Indico events to Slack.
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feedWebGL2
Tools for implementing WebGL2 feedback processing stages for graphics preprocessing or other purposes
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slurm-prometheus-exporter
Prometheus exporter for slurm job/node data
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learn-sciware-dev
Learning materials for scientific software development
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CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
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FMM3D
Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in three dimensions, on a multi-core shared-memory machine.
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DeepFRI
Deep functional residue identification
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sciware-git-collaborative
Forked from coderefinery/git-collaborativeCollaborative distributed version control lesson.
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sciware-swc-2020-09-git
2020-09-24-flatiron-online
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st_gridnet
A Python implementation of the model described in our publication "A convolutional neural network for common-coordinate registration of high-resolution histology images" developed principally for applications to registration of spatial transcriptomics image data.
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neuropixels-data-sep-2020
Example neuropixels datasets for purposes of developing spike sorting algorithms
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disBatch
Driver script (python) to distribute a batch of tasks over a collection of compute nodes.
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hither
Run batches of Python functions in containers and on remote servers
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kvsstcp
Key value storage server. Light weight (single python module with no non-standard module dependencies). Simple protocol minimizes effort needed to write a client (example for C and FORTRAN provided).
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kachery
Content-addressable storage server with Python client
