The Blue Brain Project

Repositories

• libsonata

  A python and C++ interface to the SONATA format

  simulation sonata modelling circuit
  C++ LGPL-3.0 9 3 18 (3 issues need help) 6 Updated Jun 19, 2020

• nmodl

  Code Generation Framework For NEURON MODeling Language

  hpc dsl neuroscience compilers code-generation neuron-simulator nmodl
  C++ 6 18 100 (13 issues need help) 4 Updated Jun 18, 2020

• snap

  The Blue Brain Pythonic Simulation and Network Analysis Productivity layer

  analysis simulation modeling
  Python LGPL-3.0 1 3 1 6 Updated Jun 18, 2020

• nexus

  Blue Brain Nexus - A knowledge graph for data-driven science

  scala nexus provenance knowledge-graph shacl
  Scala Apache-2.0 43 147 166 2 Updated Jun 18, 2020

• spack

  Forked from spack/spack

  A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
  Python 980 6 2 (1 issue needs help) 7 Updated Jun 18, 2020

• HighFive

  HighFive - Header-only C++ HDF5 interface
  C++ BSL-1.0 76 258 34 (1 issue needs help) 4 Updated Jun 18, 2020

• NeuroMorphoVis

  A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing digital reconstructions of neuronal morphology skeletons extracted from microscopy stacks.

  morphologies neurons blender-addon neural-modeling mesh-reconstruction soma-reconstruction morphology-analysis
  Python 15 56 23 (3 issues need help) 0 Updated Jun 18, 2020

• VessMorphoVis

  A lightweight, interactive, extensible and cross-platform framework for building, visualizing and analyzing vasculature (or blood vessels) morphologies.
  Python 0 3 10 1 Updated Jun 18, 2020

• morph-tool
  AGS Script LGPL-3.0 2 0 1 0 Updated Jun 18, 2020

• DMT
  Python 0 0 0 0 Updated Jun 17, 2020

• nexus-web

  Nexus Web is the interface of Blue Brain Nexus

  react redux nodejs javascript typescript nexus storybook
  TypeScript 2 9 0 0 Updated Jun 17, 2020

• sphinx-bluebrain-theme

  The Blue Brain Project's documentation theme.
  Python MIT 0 0 1 0 Updated Jun 16, 2020

• MOOC-hippocampus-network-simulation-2019
  Jupyter Notebook 1 4 0 1 Updated Jun 15, 2020

• insilico-vsdi
  Python LGPL-3.0 0 0 0 0 Updated Jun 15, 2020

• BluePyEfe

  BluePyEfe: Blue Brain Python E-feature extraction
  Python 3 6 0 0 Updated Jun 12, 2020

• CoreNeuron

  Simulator optimized for large scale neural network simulations.

  neural-network hpc neuroscience simulation-framework neuron supercomputing compartmental
  C++ BSD-3-Clause 19 56 56 6 Updated Jun 12, 2020

• MVDTool

  Parser and command line tool for MVD file format
  C++ 6 1 1 2 Updated Jun 12, 2020

• reframe

  Forked from eth-cscs/reframe

  A regression testing framework to facilitate the sanity checking of HPC systems.
  Python BSD-3-Clause 44 0 0 0 Updated Jun 12, 2020

• bc_bbp_jupyter

  Forked from OSC/bc_osc_jupyter

  Open OnDemand Batch Connect - BBP Jupyter Notebook Server
  HTML MIT 5 0 0 0 Updated Jun 12, 2020

• nexus-search-webapp

  The Searchable Knowledge-Graph Application

  react javascript elasticsearch nexus
  JavaScript 1 4 0 0 Updated Jun 12, 2020

• BluePyOpt

  Blue Brain Python Optimisation Library

  python cross-platform genetic-algorithm biological-simulations neuroscience computational-neuroscience evolutionary-algorithms
  Python 62 122 13 2 Updated Jun 10, 2020

• Brayns

  Visualizer for large-scale and interactive ray-tracing of neurons

  python cloud async interactive websockets visualisation neuroscience
  C++ 40 210 17 0 Updated Jun 10, 2020

• Long-range-micro-connectome

  BlueBrain's recipe writer to parameterize structure and logic of a mouse whole-neocortex connectome
  Python BSD-3-Clause 0 8 1 0 Updated Jun 10, 2020

• BluePyMM

  Blue Brain Python Cell Model Management
  Python 7 7 27 1 Updated Jun 9, 2020

• Brion

  Blue Brain C++ File IO Library

  synapse
  C++ 21 15 10 0 Updated Jun 9, 2020

• Rockets

  REST and websockets C++ library

  javascript python http json typescript cpp json-schema
  C++ 4 20 3 8 Updated Jun 8, 2020

• MorphIO-wheels
  Python 1 0 1 0 Updated Jun 5, 2020

• MorphIO

  A python and C++ library for reading and writing neuronal morphologies

  morphology neurons neuron
  C++ LGPL-3.0 6 14 23 (1 issue needs help) 5 Updated Jun 4, 2020

• eFEL

  Electrophys Feature Extraction Library

  python neuroscience computational-neuroscience neurons electrophysiology
  C++ 33 40 10 1 Updated Jun 4, 2020

• NeuroM

  Neuronal Morphology Analysis Tool

  python morphologies neurons
  Jupyter Notebook BSD-3-Clause 36 63 40 11 Updated May 27, 2020