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The Wayback Machine - https://web.archive.org/web/20200730185529/https://github.com/topics/protein-structure
Here are
209 public repositories
matching this topic...
Official git repository for Biopython (originally converted from CVS)
Updated
Jul 30, 2020
Python
Standardized data set for machine learning of protein structure
Updated
Mar 1, 2020
Python
📖 🔬 ☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Updated
Jul 24, 2020
Java
Working with molecular structures in pandas DataFrames
Updated
Jun 14, 2020
HTML
Recurrent Geometric Networks for end-to-end differentiable learning of protein structure
Updated
Aug 1, 2019
Python
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
Updated
Jun 26, 2020
Python
Remote protein homology detection suite.
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
Updated
May 18, 2020
Python
Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.
Updated
Jun 29, 2017
Python
A Python API for the RCSB Protein Data Bank (PDB)
Updated
Jun 9, 2020
Python
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (DEPRECATED)
Updated
Jan 2, 2020
Python
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to
📝 Salentin et al. (2015),
https://www.doi.org/10.1093/nar/gkv315
Updated
Jul 13, 2020
Python
📖 📚 An introductory tutorial for BioJava
Updated
May 8, 2019
Python
Updated
Jul 27, 2020
Jupyter Notebook
macromolecular crystallography library and utilities
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
Updated
May 18, 2020
Python
Molecular simulation in Julia
Updated
Jul 29, 2020
Julia
A Python framework for structural systems biology
Updated
Oct 17, 2019
Python
A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
Protein Secondary Structure predictor using Convolutional Neural Networks
Updated
Sep 26, 2019
Python
The Integrative Modeling Platform
Inference of couplings in proteins and RNAs from sequence variation
An HP 2D Lattice Environment with a Gym-like API for the Protein Folding Problem
Updated
Jul 19, 2020
Python
View proteins and trajectories in the terminal
Updated
Jul 18, 2020
Python
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
Updated
Jun 28, 2020
Groovy
3D hotspot mutation proximity analysis tool
Updated
Aug 22, 2019
Perl
Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
Updated
Nov 26, 2019
Python
The specification of the MMTF format for biological structures
Updated
May 13, 2019
Shell
Mutual Information Tools for protein Sequence analysis in Julia
Updated
Jul 30, 2020
Julia
Predicting protein structure through sequence modeling
Updated
May 4, 2020
Jupyter Notebook
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