Broad Institute

Repositories

ddp-study-server

Pepper Study Server

Java BSD-3-Clause 0 4 0 13 Updated Jul 27, 2020

rawls

Rawls service for DSDE

Scala 2 13 0 5 Updated Jul 27, 2020

pooled-cell-painting-profiling-template

🛠️ Use me to version control Pooled Cell Painting data and processing pipelines

pooled-screen cell-painting carpenter-lab pooled-cell-painting template-repository in-situ-sequencing

Shell BSD-3-Clause 2 0 0 2 Updated Jul 27, 2020

martha

Google Cloud Function for Blue Box/GUID resolution

JavaScript BSD-3-Clause 2 2 2 4 Updated Jul 27, 2020

agora

It's a methods repository!

Scala 1 9 0 1 Updated Jul 27, 2020

dig-loam-stream

dig-loam-stream

Scala 0 1 18 1 Updated Jul 27, 2020

workbench-libs

Workbench utility libraries

Scala 1 4 0 5 Updated Jul 27, 2020

dsp-appsec-seckb

Gitbook version of sec-kb

Python 0 0 0 0 Updated Jul 27, 2020

covid19-testing

COVID-19 Diagnostic Processing Dashboard

HTML MIT 1 8 0 0 Updated Jul 27, 2020

tensorqtl

Ultrafast GPU-based QTL mapper

Python BSD-3-Clause 15 49 6 0 Updated Jul 27, 2020

datarepo-helm

A helm repo for Broad Data Science Platforms helm charts

Smarty 0 0 0 2 Updated Jul 27, 2020

datarepo-helm-definitions

Helm deployment specific values and definitions for Dev, Integration and Prod

Shell 0 0 0 1 Updated Jul 27, 2020

ddp-study-manager

Pepper Study Manager

3 packages Java BSD-3-Clause 1 2 0 4 Updated Jul 27, 2020

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

docker application workflow cloud bioinformatics scala executor

Scala 204 565 636 12 Updated Jul 27, 2020

segmentation_experiments

BSRP summer internship project attempting to streamline nucleus segmentation

Jupyter Notebook MIT 0 0 5 1 Updated Jul 27, 2020

terraform-ap-modules

DSP Analysis Platform Terraform Modules

HCL 0 0 0 1 Updated Jul 27, 2020

terra-helm

A helm repo for Terra from Broad Data Science Platforms Group

Smarty 1 1 0 3 Updated Jul 27, 2020

terraform-jade

HCL 0 0 0 2 Updated Jul 27, 2020

import-service

Terra Import Service

Python BSD-3-Clause 0 1 0 0 Updated Jul 27, 2020

wfl

WorkFlow Launcher (née Zero)

Clojure BSD-3-Clause 0 4 0 3 Updated Jul 27, 2020

palantir-workflows

Utility workflows for the DSP palantir team

wdl BSD-3-Clause 0 4 0 3 Updated Jul 27, 2020

terraform-shared

Reusable Terraform modules

HCL 1 2 1 1 Updated Jul 27, 2020

long-read-pipelines

Long read production pipelines

Jupyter Notebook BSD-3-Clause 0 30 24 (1 issue needs help) 7 Updated Jul 27, 2020

lunaris

Lunaris reads and munges data from block-gzipped, location-sorted, tabix-indexed files on Google Cloud.

Scala BSD-3-Clause 1 0 1 1 Updated Jul 27, 2020

gatk

Official code repository for GATK versions 4 and up

science bioinformatics spark genomics genome ngs sequencing

Java BSD-3-Clause 352 850 883 (8 issues need help) 80 Updated Jul 27, 2020

gnomad-browser-toolkit

A collection of reusable components and tools for building genomic data browsers

JavaScript MIT 0 1 3 1 Updated Jul 27, 2020

pooled-cell-painting-profiling-recipe

👩‍🍳 Recipe repository for image-based profiling of Pooled Cell Painting experiments

data-science recipe pooled-screen cell-painting carpenter-lab pooled-cell-painting in-situ-sequencing

Python BSD-3-Clause 2 1 12 2 Updated Jul 27, 2020

push-to-cloud-service

This is the repo for the WorkFlow Launcher's PTC server

Clojure BSD-3-Clause 0 2 0 2 Updated Jul 27, 2020

single_cell_portal_core

Rails/Docker application for the Broad Institute's single cell RNA-seq data portal

rna-seq-analysis single-cell-genomics human-cell-atlas

Ruby BSD-3-Clause 19 33 0 2 Updated Jul 27, 2020

ddp-angular

Angular code for participant-facing pepper studies

TypeScript 0 1 0 6 Updated Jul 27, 2020