#
bioconda
Here are 27 public repositories matching this topic...
Structural variation caller using third generation sequencing
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Sep 2, 2020 - C++
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
docker
mapper
next-generation-sequencing
alignment
long-read
pacbio
bioconda
oxford-nanopore
structural-variations
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Sep 3, 2019 - C++
Toolset for SV simulation, comparison and filtering
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Sep 1, 2020 - C++
covtobed | Convert the coverage track from a BAM file into a BED file
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Jul 28, 2020 - C++
Recommendations to contenarized your bioinformatics software
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May 30, 2018 - Shell
BioContainers Documentation.
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Jul 29, 2020 - JavaScript
A quick overview of how to use Bioconda, and create recipes
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Dec 12, 2018 - Jupyter Notebook
Data analysis related to the bioconda paper
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Apr 17, 2018 - Python
Get exons from a transcriptome and raw genomic reads using abyss-bloom and bedtools
rna-seq
network
assembly
bloom-filter
conda
pandas
python3
biopython
bioconda
kmer
transcriptome
transcriptomics
bedtools
exon
abyss
splice-graphs
biobloomtools
abyss-bloom
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Jul 28, 2020 - Python
Build a Reproducible Jupyter Workflow From Scratch (2017 NIH Hour of Code)
python
workflow
bioinformatics
jupyter
jupyter-notebook
python3
hour-of-code
bioconda
anaconda-distribution
nih
niaid
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Jan 11, 2018 - Jupyter Notebook
bash
bioinformatics
ubuntu
conda
bioconda
bash-script
featurecounts
video-demonstration
fastq-dump
windows-subsystem
bioinformatics-programs
bioinformatics-notebook
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Aug 20, 2020 - Shell
Containers for running ESM related tools
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Feb 27, 2020 - CSS
Practical Guide to Reproducibility in Bioinformatics (Work In Progress)
docker
bioinformatics
reproducible-research
jupyter-notebook
conda
rmarkdown
reproducible-science
bioconda
reproducibility
domain-specific-language
biocontainers
workflow-automation
conda-environment
reproducible-analysis
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Jul 25, 2020 - Nextflow
The BWA v0.7.17 read mapper, build from bioconda
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May 18, 2020 - Dockerfile
SAMtools and BCFtools (v1.10) for manipulating next-generation sequencing data, from bioconda
docker
bam-files
sam
vcf
bioconda
bam
vcf-files
miniconda3
variant-call-format
sam-files
sequence-manipulation
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May 18, 2020 - Dockerfile
Docker based on bioconda distribution (v.1.23), with fixed memory issue
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May 14, 2020 - Dockerfile
Snakemake environment with `environment.yml` within Binder
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Jul 10, 2019 - Jupyter Notebook
snakemake pipeline for gatk running on binder
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May 22, 2019 - HTML
MEGA ATAC-seq Workflow implementation
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Jun 11, 2020 - Python
Communities dump their resource/software information, and have them merged
json
debian
conda
bioconda
edam
bio-dot-tools
biotoolsschema
json-records
debian-med
json-buffer
edam-annotations
seqwiki
biii-info
neubias
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Mar 31, 2017
This project aims do describe and explore the metagenomes of fern species of the genus Azolla.
bioinformatics
snakemake
conda
metagenomics
bioinformatics-pipeline
plant
bioconda
biological-data-analysis
metagenomes
symbiosis
fair-data
metagenome-assembly
metagenomic-pipeline
symbiont
azolla
endophytes
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Jan 8, 2020 - Python
Bioconda Recipe Generator (BiRG) is an heuristic approach to automatically generating recipes for Bioconda
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Apr 15, 2020 - Python
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