QData

Repositories

• TextAttack

  TextAttack 🐙 is a Python framework for adversarial attacks, data augmentation, and model training in NLP

  nlp security machine-learning natural-language-processing data-augmentation adversarial-machine-learning adversarial-examples
  Python MIT 56 682 9 (3 issues need help) 4 Updated Jul 24, 2020

• FastSK

  FastSK: Fast and Accurate Sequence Classification using Support Vector Machines

  cpp python-library sequence-classification string-kernel string-classification
  Python Apache-2.0 4 10 0 1 Updated Jul 9, 2020

• deepWordBug

  CodeBase for Paper: "Black-box Generation of Adversarial Text Sequences to Evade Deep Learning Classifiers", / Interactive Demo @
  Python Apache-2.0 18 32 0 0 Updated Jun 23, 2020

• AdversarialDNN-Playground

  VizSec17: Web-based visualization tool for adversarial machine learning / LiveDemo

  visualization python machine-learning deep-neural-networks neural-network tensorflow adversarial-samples
  Python Apache-2.0 25 102 0 0 Updated Jun 7, 2020

• deep-learning-undergrad-reading-group

  deep learning reading group for undergrads at UVA
  CSS 0 1 0 0 Updated Apr 28, 2020

• cifar10_web

  Load CIFAR-10 from user-specified directory (default /home/USER/data/cifar10 or Windows equivalent). Automatically download to that directory the CIFAR-10 tar file if not present.
  Python 0 0 0 0 Updated Apr 13, 2020

• DeepProtein
  Python 0 0 0 0 Updated Mar 16, 2020

• deep2Read

  https://qdata.github.io/deep2Read/ This website includes a (growing) list of papers and lectures we read about deep learning and related.

  jekyll baseurl gitpage hyde
  CSS Apache-2.0 12 42 0 0 Updated Jan 26, 2020

• DeepChrome

  Bioinformatics16: DeepChrome: Deep-learning for predicting gene expression from histone modifications

  bioinformatics deep-neural-networks understanding-computation epigenetic-data
  Lua Apache-2.0 15 45 1 0 Updated Jan 20, 2020

• DeepDiffChrome

  "DeepDiff: Deep-learning for predicting Differential gene expression from histone modifications", Bioinformatics, Volume 34, Issue 17,
  Python Apache-2.0 7 11 0 0 Updated Dec 10, 2019

• LaMP

  Graph Neural Networks for Multi-Label Classification

  nlp multi-label-classification graph-attention-networks graph-neural-networks
  Python MIT 8 42 1 0 Updated Dec 5, 2019

• ChromeGCN

  Graph Neural Networks for DNA Sequence Classification
  0 1 0 0 Updated Nov 14, 2019

• JointNets

  JointNets: an end-to-end R package for sparse high-dimensional Gaussian graphical model estimation, visualization, simulation and evaluation.
  R Apache-2.0 0 2 0 0 Updated Nov 14, 2019

• SanityCheckDNNExplainer
  Jupyter Notebook Apache-2.0 1 0 0 0 Updated Aug 29, 2019

• JEEK

  ICML18: JEEK - Fast and Scalable Joint Estimator for Integrating Additional Knowledge in Learning Multiple Related Sparse Gaussian Graphical Models
  R Apache-2.0 0 1 0 0 Updated Aug 28, 2019

• GaKCo-SVM

  ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting

  kernel fasta gakco-svm
  C++ Apache-2.0 5 12 0 0 Updated Aug 28, 2019

• DIFFEE

  AISTAT2018: Fast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure
  R Apache-2.0 0 0 0 0 Updated Aug 28, 2019

• DeepCloak

  ICLR16: DeepCloak: Masking Deep Neural Network Models for Robustness Against Adversarial Samples

  mask residual-networks robustness adversarial-samples
  Lua Apache-2.0 0 7 0 0 Updated Aug 28, 2019

• FASJEM

  AISTAT 2017 Paper: A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models

  machine-learning graphical-models multitasking gaussian-graphical-models
  R Apache-2.0 0 0 0 0 Updated Aug 28, 2019

• SIMULE

  https://cran.r-project.org/web/packages/simule/

  graphical-models gaussian-graphical-models covariance-matrices data-matrices
  R Apache-2.0 1 3 0 0 Updated Aug 28, 2019

• TransferStringKernel

  Transfer String Kernel for Cross-Context String Classification
  MATLAB Apache-2.0 1 1 0 0 Updated Aug 28, 2019

• Paper12-PlosOne-DeepProteinMultitaskTagging

  Forked from DeepLearning4BioSeqText/Paper12-PlosOne-DeepProteinMultitaskTagging

  A Deep-Learning based Multi-Task Framework for Protein Sequence Labeling / Local Structural Property Prediction on biological Sequences
  Lua Apache-2.0 3 0 0 0 Updated Aug 28, 2019

• Paper15-MetricLearn4CancerExpression

  Forked from DeepLearning4BioSeqText/Paper15-MetricLearn4CancerExpression
  MATLAB Apache-2.0 6 0 0 0 Updated Aug 28, 2019

• AttentiveChrome

  NeurIPS17: [AttentiveChrome] Attend and Predict: Using Deep Attention Model to Understand Gene Regulation by Selective Attention on Chromatin

  deep-learning epigenetic-data deep-neural-network interpretable-deep-learning
  Lua MIT 6 19 0 0 Updated Jul 23, 2019

• DeepMotif

  Deep Motif (ICLR16)/ Deep Motif Dashboard (PSB17): Visualizing Genomic Sequence Classifications

  deep-learning genomics torch
  Lua MIT 13 38 0 0 Updated Apr 19, 2019

• EvadeML-Zoo

  Forked from mzweilin/EvadeML-Zoo

  Benchmarking and Visualization Tool for Adversarial Machine Learning
  Python MIT 50 2 0 0 Updated Apr 13, 2019

• AdversarialChess

  Forked from 2014mchidamb/AdversarialChess

  Style transfer for chess.
  Python MIT 7 0 0 0 Updated Aug 4, 2017

• FeatureSqueezing

  NDSS18: Detecting Adversarial Examples in Deep Neural Networks
  Python MIT 2 11 0 0 Updated Apr 20, 2017

• EvadeML

  Forked from uvasrg/EvadeML

  An evolutionary framework for evading machine learning-based malware classifiers.
  CSS MIT 39 0 0 0 Updated Jul 3, 2016

• Paper12-NIPS-SparseGGM4LatentFactors

  Forked from DeepLearning4BioSeqText/Paper12-NIPS-SparseGGM4LatentFactors

  Code for Learning Dependency Graph between Latent Factors from Data
  R MIT 2 0 0 0 Updated May 18, 2015