biological-data-analysis

Parser and database to index the terpene profile of different strains of Cannabis from online databases

The U-Net Segmentation plugin for Fiji (ImageJ)

An implementation of MNN (Mutual Nearest Neighbors) correct in python.

The new and improved 2018 version of the EMBL Python BioImage Analysis Tutorial. Now finally in python 3!

Accelerate data driven research on embryos with deep learning models 🔬

PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis

Phigaro is a scalable command-line tool for predicting phages and prophages

GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language

Neural networks for amino acid sequences

Nucleic and amino acid primitive types

PHOsphoproteomic dissecTiOn using Networks

A python library for advanced lattice light-sheet image analysis

Kaggle Competitions: Find the nuclei in divergent images to advance medical discovery

Collection of statistical scripts, image analysis workflows, data used in publications by the Misteli Lab.

A Pure-Python parser of HMMER3 output

Multi-Layer Random Forest, with Circularity Features, for Image Segmentation

A toolkit for predicting the binding mode of small molecules interacting with proteins based on interfacial rigidification, as assessed by graph theoretic constraint counting on the covalent and noncovalent bond network. Raschka et al. (2016) Proteins: Structure, Function, and Bioinformatics

TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data

Convert optical density data (red and infrared) from functional near infrared spectrope (fNIRS) to oxy, de-oxy haemoglobin concentrations using modified Beer-Lambert law.

A genetic decypher written in C. A school work of a student at Universidade Metodista de Angola.

A pure python lazy BAM parser

Visualise high throughput behavioural data in R, based on ggplot2

Common lisp tool for DNA data sonification

R package: Condition-Decomposition Normalization for Biological Applications

Node Classification on Biological networks using Deep learning

Data structure to store and manipulate high throughput behavioural data in R

Analyse sleep from movement (e.g. in Drosophila)

FlavinDB

Calculate frequency domain Heart rate variability for matlab

A single-layer Random Forest model for voxel classification (volume segmentation).