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Jun 15, 2020 - Python
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graph-embedding
Here are 106 public repositories matching this topic...
A collection of important graph embedding, classification and representation learning papers with implementations.
deepwalk
kernel-methods
attention-mechanism
network-embedding
graph-kernel
graph-kernels
graph-convolutional-networks
classification-algorithm
node2vec
weisfeiler-lehman
graph-embedding
graph-classification
graph-attention-networks
graph-representation-learning
graph2vec
deep-graph-kernels
netlsd
graph-attention-model
structural-attention
node-embedding
A distributed graph deep learning framework.
deep-learning
graph
network-embedding
random-walk
graph-convolutional-networks
gcn
node2vec
graph-embedding
graph-learning
graphsage
graph-neural-networks
ggnn
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Jun 10, 2020 - C++
A general purpose community detection and network embedding library for research built on NetworkX.
machine-learning
sklearn
community-detection
network-science
deepwalk
networkx
supervised-learning
louvain
unsupervised-learning
network-embedding
scikit
label-propagation
gcn
graph-clustering
node2vec
networkx-graph
graph-embedding
graph2vec
node-embedding
2vec
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Jun 10, 2020 - Python
A parallel implementation of "graph2vec: Learning Distributed Representations of Graphs" (MLGWorkshop 2017).
machine-learning
kernel
line
word2vec
deepwalk
matrix-factorization
unsupervised-learning
graph-kernel
node2vec
weisfeiler-lehman
noise-contrastive-estimation
graph-embedding
graph2vec
subgraph2vec
graph-wavelet
node-embedding
struc2vec
implicit-matrix-factorization
diff2vec
gemsec
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May 31, 2020 - Python
A graph sampling extension library for NetworkX.
machine-learning
deep-learning
graph
graph-algorithms
network-science
networkx
sampling
network-embedding
random-walk
metropolis-hastings
minimum-spanning-tree
graph-embedding
forest-fire
graph-sampling
network-analytics
node-embedding
graph-sparsification
community-structure
network-sampling
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Jun 10, 2020 - Python
jiank2
commented
Apr 21, 2020
In LINE's code, there might be a minor error in negative sampling part (if I understand it correctly).
https://github.com/THUDM/cogdl/blob/a69a969020b8aa41cfcd8ac54511984bc5b32d62/cogdl/models/emb/line.py#L133-L137
If index j for negative samples start at 1, then the number of negative sample should be self.negative-1. For example, if you set self.negative=5, 0 is not the negative sample (sin
PyTorch Implementation and Explanation of Graph Representation Learning papers involving DeepWalk, GCN, GraphSAGE, ChebNet & GAT.
pytorch
deepwalk
graph-convolutional-networks
graph-embedding
graph-attention-networks
chebyshev-polynomials
graph-representation-learning
node-embedding
graph-sage
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May 23, 2020 - Jupyter Notebook
A PyTorch implementation of "SimGNN: A Neural Network Approach to Fast Graph Similarity Computation" (WSDM 2019).
machine-learning
deep-learning
neural-network
tensorflow
sklearn
pytorch
attention-mechanism
network-embedding
wsdm
ged
gcn
graph-embedding
graph-classification
tensor-network
graph-similarity
graph-convolution
graph-attention
gnn
graph-edit-distance
simgnn
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May 31, 2020 - Python
A reading paper list which is mainted daily
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Updated
Mar 25, 2020
Representation-Learning-on-Heterogeneous-Graph
machine-learning
deep-learning
representation-learning
network-embedding
graph-embedding
heterogeneous-information-networks
network-representation-learning
graph-neural-network
heterogeneous-graph
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Mar 13, 2020
A PyTorch implementation of "Predict then Propagate: Graph Neural Networks meet Personalized PageRank" (ICLR 2019).
machine-learning
deep-neural-networks
research
deep-learning
pagerank
pytorch
deepwalk
attention
network-embedding
gcn
iclr
node2vec
graph-embedding
graph-classification
node-embedding
graph-attention
graph-convolutional-neural-networks
graph-neural-network
ppnp
appnp
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May 31, 2020 - Python
The TensorFlow reference implementation of 'GEMSEC: Graph Embedding with Self Clustering' (ASONAM 2019).
machine-learning
facebook
neural-network
clustering
tensorflow
word2vec
community-detection
deezer
deepwalk
matrix-factorization
gensim
unsupervised-learning
embedding
network-embedding
node2vec
graph-embedding
gemsec
implicit-factorization
semisupervised-learning
m-nmf
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May 31, 2020 - Python
A PyTorch implementation of "Signed Graph Convolutional Network" (ICDM 2018).
machine-learning
deep-learning
neural-network
gae
pytorch
deepwalk
network-embedding
gcn
side
node2vec
graph-embedding
node-classification
graphsage
graph-neural-networks
graph-convolution
graph-attention
signed-network
sgcn
sdne
pytorch-geometric
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May 31, 2020 - Python
A Pytorch implementation of "Splitter: Learning Node Representations that Capture Multiple Social Contexts" (WWW 2019).
machine-learning
deep-learning
clustering
word2vec
community-detection
pytorch
deepwalk
gensim
factorization
network-embedding
node2vec
graph-embedding
overlapping-community-detection
deep-neural-network
graph-representation-learning
node-embedding
implicit-factorization
graph-neural-network
ego-splitting
word-vector
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Apr 1, 2020 - Python
A PyTorch implementation of "Semi-Supervised Graph Classification: A Hierarchical Graph Perspective" (WWW 2019)
deep-learning
tensorflow
machine-learning-algorithms
pytorch
deepwalk
deep-learning-algorithms
network-embedding
active-learning
graph-convolutional-networks
gcn
node2vec
graph-embedding
graph-classification
active-learning-module
node-classification
graph-neural-networks
graph-representation-learning
graph-convolution
gnn
graph-neural-network
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May 31, 2020 - Python
A repository of pretty cool datasets that I collected for network science and machine learning research.
data-science
benchmark
machine-learning
community-detection
network-science
deepwalk
dataset
dimensionality-reduction
network-analysis
network-embedding
link-prediction
gcn
node2vec
graph-embedding
node-classification
graph2vec
node-embedding
graph-convolution
gnn
graph-neural-network
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May 21, 2020
A scalable implementation of "Learning Structural Node Embeddings Via Diffusion Wavelets (KDD 2018)".
machine-learning
word2vec
spectral
factorization
kdd
wavelet
unsupervised-learning
embedding
diffusion
laplacian
refex
node2vec
graph-embedding
graphwave
graph-wavelet
struc2vec
rolx
structural-embedding
structural-role
heat-kernel
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May 31, 2020 - Python
Python based Graph Propagation algorithm, DeepWalk to evaluate and compare preference propagation algorithms in heterogeneous information networks from user item relation ship.
python
graph
rating
prediction
deepwalk
recommendation-system
graph-propagation-algorithm
graph-embedding
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Feb 4, 2018 - Python
A state of the art knowledge base
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Updated
Jun 1, 2020 - Python
Graph Embedding Evaluation / Code and Datasets for "Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations" (Bioinformatics 2020)
gae
deepwalk
matrix-factorization
network-embedding
link-prediction
node2vec
graph-embedding
node-classification
graph-embedding-methods
struc2vec
sdne
graph-embeddings-evaluation
biomedical-networks
line-embedding
graph-factorization
biomedical-graphs
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Apr 14, 2020 - Python
A scalable Gensim implementation of "Learning Role-based Graph Embeddings" (IJCAI 2018).
machine-learning
research
deep-learning
tensorflow
word2vec
sklearn
network-science
pytorch
deepwalk
gensim
representation-learning
network-embedding
node2vec
weisfeiler-lehman
graph-embedding
graph-wavelet
node-embedding
struc2vec
implicit-factorization
graph-neural-network
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Jun 1, 2020 - Python
Recommender Systems Paperlist that I am interested in
embeddings
collaborative-filtering
recommender-systems
ctr-prediction
graph-embedding
neural-collaborative-filtering
sequential-recommendation
knowledge-graph-for-recommendation
industry-recommendations
session-based-recommendation
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Apr 24, 2020
Reference implementation of Diffusion2Vec (Complenet 2018) built on Gensim and NetworkX.
machine-learning
deep-learning
neural-network
tensorflow
embeddings
deepwalk
gensim
complex-networks
factorization
unsupervised-learning
embedding
network-embedding
diffusion
node2vec
graph-embedding
node-embedding
struc2vec
diff2vec
implicit-factorization
semisupervised-learning
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May 31, 2020 - Python
A lightweight implementation of Walklets from "Don't Walk Skip! Online Learning of Multi-scale Network Embeddings" (ASONAM 2017).
machine-learning
deep-learning
word2vec
deepwalk
dimensionality-reduction
gensim
edge-prediction
multiscale
graph-mining
embedding
node2vec
word-embedding
graph-embedding
node-classification
graph-neural-networks
node-embedding
walklet
graphlet
dont-walk-skip
graph-convolution
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May 31, 2020 - Python
An implementation of "EdMot: An Edge Enhancement Approach for Motif-aware Community Detection" (KDD 2019)
deep-learning
community-detection
motif
deepwalk
networkx
louvain
igraph
network-embedding
graph-partitioning
gcn
graph-clustering
node2vec
graph-embedding
graph-algorithm
graph2vec
gemsec
gnn
network-motif
graph-motif
graph-deco
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May 31, 2020 - Python
CogDL-TensorFlow: The TensorFlow Implementation of CogDL. With Support from Professor Jie Tang.
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Jan 17, 2020 - Python
A sparsity aware and memory efficient implementation of "Attributed Social Network Embedding" (TKDE 2018).
data-science
tensorflow
word2vec
deepwalk
feature-extraction
dimensionality-reduction
factorization
representation-learning
embedding
network-embedding
node2vec
graph-embedding
attributed
node-embedding
diff2vec
gemsec
attributed-embedding
2vec
aane
asne
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May 31, 2020 - Python
A sparsity aware implementation of "Enhanced Network Embedding with Text Information" (ICPR 2018).
machine-learning
deep-learning
tensorflow
pytorch
deepwalk
matrix-factorization
feature-extraction
pattern-recognition
network-embedding
node2vec
graph-embedding
node-classification
node-embedding
implicit-factorization
tadw
attributed-embedding
asne
graph-convolution
graph-neural-network
matrix-decomposition
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Updated
May 31, 2020 - Python
A PyTorch Implementation of "SINE: Scalable Incomplete Network Embedding" (ICDM 2018).
machine-learning
deep-learning
tensorflow
sklearn
torch
pytorch
deepwalk
networkx
dimensionality-reduction
gensim
unsupervised-learning
network-embedding
node2vec
graph-embedding
node-embedding
tadw
aane
asne
walklets
grarep
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Updated
May 31, 2020 - Python
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I'm looking to create embeddings for the STRING protein-protein interaction database. In this notebook, I convert this network to
scipy.sparse.csr_matrixandnumpy.arrayformats. The network is big with 19,566 nodes and 11,759,454 (divide that in two for bidi