Dana Pe'er Lab

seqc
Forked from ambrosejcarr/seqc
Single-Cell Sequencing Quality Control and Processing Software

Python GPL-2.0 9 2 0 0 Updated Oct 2, 2019
Harmony

Harmony framework for connecting scRNA-seq data from discrete time points

scrna-seq mnn batch-correction scrna-seq-analysis developmental-trajecotries

Jupyter Notebook GPL-2.0 2 10 1 0 Updated Oct 1, 2019
PhenoGraph
Forked from jacoblevine/PhenoGraph
Subpopulation detection in high-dimensional single-cell data

Python MIT 34 1 0 0 Updated Sep 19, 2019
magic
Forked from KrishnaswamyLab/MAGIC
MAGIC - imputation and de-noising single-cell RNA seq data sets

Jupyter Notebook GPL-2.0 52 8 0 0 Updated Sep 19, 2019
Palantir

Single cell trajectory detection

markov-chain dimensionality-reduction scrna-seq trajectory-generation diffusion-maps differentiation manifold-learning

Jupyter Notebook GPL-2.0 11 40 2 0 Updated Aug 22, 2019
scanpy
Forked from theislab/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.

Python BSD-3-Clause 185 0 0 0 Updated Aug 8, 2019
DoubletDetection
Forked from JonathanShor/DoubletDetection
Doublet detection in single-cell RNA-seq data.

Python MIT 10 2 0 0 Updated Jun 28, 2019
mnnpy
Forked from chriscainx/mnnpy
An implementation of MNN (Mutual Nearest Neighbors) correct in python.

Python BSD-3-Clause 13 0 0 0 Updated Jun 13, 2019
velocyto_mapping

Python 0 0 0 0 Updated Mar 21, 2019
cellranger
Forked from 10XGenomics/cellranger
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly

Python 45 0 0 0 Updated Feb 27, 2019
CTLA4KO

MATLAB 0 1 0 0 Updated Feb 9, 2019
DREMI

0 0 0 0 Updated Jan 16, 2019
tides

MATLAB 0 1 0 0 Updated Oct 26, 2018
dpeerlab-website

A copy of old lab website from Columbia (https://dpeerlab.github.io/dpeerlab-website/index.html). Content is not updated since 2017. New website: https://www.mskcc.org/research-areas/labs/dana-pe-er

HTML 1 0 0 0 Updated Jul 15, 2018
CONEXIC

COpy Number and EXpression In Cancer (CONEXIC)

Mercury 1 1 1 0 Updated Jul 10, 2018
wishbone
Forked from ManuSetty/wishbone
Wishbone is an algorithm to align cells along developmental trajectories with branches

Jupyter Notebook GPL-2.0 27 2 0 0 Updated Jun 14, 2018
cyt3

Matlab GUI for analysis of mass cytometry data

data-visualization single-cell

MATLAB 2 1 2 0 Updated Jun 13, 2018
BISCUIT_SingleCell_IMM_ICML_2016
Forked from sandhya212/BISCUIT_SingleCell_IMM_ICML_2016
R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.

R 20 1 0 0 Updated Mar 7, 2018
sctools
Forked from HumanCellAtlas/sctools
Utilities for large scale distributed single cell data processing

Python BSD-3-Clause 2 0 0 0 Updated Nov 17, 2017
MAGIC_EMT

0 0 0 0 Updated Nov 10, 2017
h5
Forked from ambrosejcarr/h5
Simple wrapper around pandas hdf5 method to allow safe usage

Python 1 0 0 0 Updated May 24, 2017

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