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Nicholas Noll nnoll

I'm a quantitative biologist interested in microbial evolution using computational inference techniques inspired by statistical physics.

Neher Lab. Biozentrum. University Basel.
Goleta, California
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I'm a quantitative biologist interested in microbial evolution using computational inference techniques inspired by statistical physics.

Neher Lab. Biozentrum. University Basel.
Goleta, California
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Block or report user

Report or block nnoll

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tissueAnalysisSuite

A complete set of MATLAB code to segment live-image movies of developing epithelial tissues, track cellular flows, and infer intercellular stresses.

MATLAB 1 1
vertexModelSimulation

Simulates a growing, dividing epithelial tissue under the active tension network model, as well as under finite pressure differentials.

MATLAB

645 contributions in the last year

Contribution activity

May 2020

nnoll has no activity yet for this period.

April 2020

Created a pull request in neherlab/covid19_scenarios that received 12 comments

Model uncertainty in input parameters

Related issues and PRs An updated version of PR #375 but now living in the validated world of YAML. Discussion #269. Description Introduces a new R…

+8,751 −3,027 • 12 comments

[Fix] Update the age stratified chart to have error bars Apr 29
Tooltip for effective reproductive number Apr 28
Harmonize python export with schema v2 Apr 28
Round of lower/upper bounds on R0 & mitigation efforts Apr 21
Change model results to percentiles over geometric mean/standard deviation Apr 21
Introduce types onto the model Apr 19
[Hotfix] Incorrect scenario merging caused faulty mitigation strategie… Apr 16
Update cost function for data fitting. Apr 16
[1.2] Fix slider performance and styles Apr 15
Automate selection of case thresholds for data fitting procedure Apr 15
[HOTFIX] Regression with cumulative counts within model Apr 15
Improve fitting of scenario parameters Apr 14
Variable number of new empirical cases now depends on infectious window. Apr 12
Allow for export of all stratified simulation data Apr 12
[HOTFIX] Sorting of dates Apr 9
Fix/icu capitalization Apr 7
updated the pages to reflect the fact that data is now fit to Apr 7
Change ODE integration method Apr 6
Age distribution within JSON = list of entries. Apr 6
Use generated types within data directory. Apr 6
[WIP] Feat/parameter uncertainty Apr 3
Provide Pipenv environment for data contributors Apr 1
[WIP] Type schema for data directory Apr 1
Reintegrate the data into the main repo Apr 1

Run simulation on a webworker Apr 20
use 'undefined' for empirical cases prior to the difference window Apr 13
Improve rendering performance Apr 6
Feat/solve ode until Apr 1

Created an issue in neherlab/covid19_scenarios that received 3 comments

[1.2] A detailed run toggle

🙋 Feature Request With the addition of parameter uncertainty ranges, we now run a set of simulations and report on the statistics of trajectories …

2 of 3 • 3 comments

Case counts validation fails despite passing Python side. Apr 7

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