The Wayback Machine - https://web.archive.org/web/20191219161619/https://github.com/dhimmel

dhimmel Follow

🎯

Focusing

Daniel Himmelstein dhimmel

🎯

Focusing

Open sourceror. Digital craftsman of the biodata revolution

Pro

Block or report user

Report or block dhimmel

Contact Support about this user’s behavior.

Learn more about reporting abuse

Organizations

Open sourceror. Digital craftsman of the biodata revolution

Block or report user

Report or block dhimmel

Contact Support about this user’s behavior.

Learn more about reporting abuse

Pinned

manubot/rootstock

Clone me to create your Manubot manuscript

HTML 199 44
hetio/hetionet

Hetionet: an integrative network of disease

HTML 75 24
cognoma/cognoma

Putting machine learning in the hands of cancer biologists

Jupyter Notebook 88 29
obonet

OBO-formatted ontologies → networkx (Python 3)

Python 48 14
hetio/hetnetpy

Hetnets in Python (relocated from dhimmel/hetio)

Python 41 16
lincs

Library of Integrated Cellular Signatures L1000

Jupyter Notebook 12 3

2,050 contributions in the last year

Activity overview

Contributed to greenelab/meta-review, manubot/manubot, manubot/rootstock and 5 other repositories

Contribution activity

December 2019

Created a pull request in manubot/manubot that received 2 comments

process: add software versions to variables

refs manubot/rootstock#282

+63 −0 • 2 comments

process: YAML metadata use 'authors' not 'author_info' Dec 18
Expand url_to_citekey support Dec 13
CSL Item: Remove newlines in arXiv abstract Dec 13
zotero search_or_web_query to support URL or ID lookup Dec 12
url_to_citekey: convert from URL to citekey Dec 11

Update metadata.authors & USAGE Dec 18

Add general information for how to use this repo Dec 10

retire python 3.4, add python 3.8 Dec 9

bpo-29636: json.tool: Add document for indentation options. Dec 6

Update metadata.authors & USAGE Dec 18
update plugins based on upstream package changes Dec 13

Working disc model Dec 13
Word vector fix Dec 12

url_to_citekey: convert from URL to citekey Dec 11

bpo-29636: json.tool: Add document for indentation options. Dec 6

Add signature-gene weight to Participation model Dec 3

Created an issue in manubot/rootstock that received 7 comments

Figure tooltip includes whole manuscript

Hover over "Figure 1" at https://gweissman.github.io/icu_ml_ms/v/59d6bae8e44136e33978320d069ad7f8aa0cf22f/ and see: The figure tooltip includes …

7 comments

Creating a standard metadata format for scholarly documents Dec 18

Use translation-server to export directly to CSL JSON Dec 15

What service is used for title search? Dec 12

Possibility of posting study mansucript as a preprint? Dec 9

webpage: consider adding a header, footer, etcetera for navigation, branding, and metadata Dec 2

Joined the ResearchHub organization

ResearchHub

You can’t perform that action at this time.