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graph-convolutional-networks

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dylanwinty
dylanwinty commented Aug 17, 2019

base_layers.py中:embedding 的call
def call(self, inputs):
shape = inputs.shape
inputs = tf.reshape(inputs,[-1])
output_shape = shape.concatenate(self.dim)
output_shape = [d if d is not None else -1 for d in output_shape.as_list()] #//tensorshape->[,,] list
return tf.reshape(tf.nn.embedding_lookup(self.embeddings, inputs),output_shape)

**GraphSage-ShallowEncoder e

adocherty
adocherty commented Nov 27, 2019

Description

Currently our unit tests are disorganized and each test creates example StellarGraph graphs in different or similar ways with no sharing of this code.

This issue is to improve the unit tests by making functions to create example graphs available to all unit tests by, for example, making them pytest fixtures at the top level of the tests (see https://docs.pytest.org/en/latest/

dongcy-AHU
dongcy-AHU commented Sep 18, 2019

读了你的源码,关于这些矩阵names = ['x','y','tx','ty','allx','ally','adj']分别代表什么?
比如allx => the feature vectors of both labeled and unlabeled training docs/words,你的实验数据不都是有标签的嘛,为什么会有unlabeled training docs?
你在论文中说你的节点初始化为one-hot向量,而我在代码中看到你用word嵌入的平均作为doc嵌入输入,这是为什么?the one-hot labels of the labeled training docs又代表什么?
关于这些x,y,tx,ty等等,我比较难懂,请求您抽出时间为我解答,非常感谢

nshervt
nshervt commented Nov 9, 2019

When following NFP's homo prediction tutorial, recieved the following error

ValueError: Object arrays cannot be loaded when allow_pickle=False

When ran the following code

from chainer.datasets import split_dataset_random
from chainer_chemistry import datasets as D
from chainer_chemistry.dataset.preprocessors import preprocess_method_dict
from chainer_chemistry.datasets import Nu

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