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statistical-analysis

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michaelosthege
michaelosthege commented Nov 21, 2019

Description of your problem

Most distributions support multiple parameterizations that are hard to grasp from the little description that we have. In some cases the scipy.stats documentation is not helping either.

Proposal / Ideas for improvement

  • state what the default parameterization would be
  • show examples with both (equal) parameterizations
  • link to the scipy.stats distrib
fransschreuder
fransschreuder commented Oct 29, 2019

Expected behavior and actual behavior.

Right now there are some statistics on the current or a specific branch, I couldn't find a way to output per user commits for instance of all branches. Would be nice to have.

Steps to reproduce the problem.

Specifications like the version of the project, operating system, or hardware.

trantor
trantor commented Jan 23, 2020

Hello.
I've come across what (to me) seems to be a problem with the FILENAME and FILENUM variables.

# mlr --version
Miller v5.6.2

# cat /tmp/csv1
A,B,C
_2GB,255,2
_4GB,120,4
_6GB,50,6
_10GB,10,10

# cat /tmp/csv2
FIRST,SECOND,THIRD,FOURTH
1,2,3,4
5,6,7,8
9,10,11,12
13,14,15,16

# mlr --icsv cat then put 'print FILENAME'   /tmp/csv1 /tmp/csv2
/tmp/csv1
A=_2GB,B=255,C=2
/
pycm
sepandhaghighi
sepandhaghighi commented Jan 31, 2020

Description

Recently I found that normalized_table_calc function is too slow (more than 30% of the total execution time!!!) and it seems that the reason is the poor performance of numpy.around and built-in round function in scalar mode!!

I think, we should define our custom rounder function, something like this :

def custom_rounder(input_number,digit):
    p =
seb-mueller
seb-mueller commented Oct 1, 2019

In order to count methylated and unmethylated cystosines, the documentation at 3.5 Tiling windows analysis states this code:

tiles=tileMethylCounts(myobj,win.size=1000,step.size=1000)

In order to obtain the myobj object this code is stated further up (which is the only place where this is defined):

# read the files to a methylRawList object: myobj
myobj=methRead(file.l

Meta.Numerics is library for advanced numerical computing on the .NET platform. It offers an object-oriented API for statistical analysis, advanced functions, Fourier transforms, numerical integration and optimization, and matrix algebra.

  • Updated Feb 28, 2019
  • C#

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