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May 27, 2021 - Perl
#
genome-annotation
Here are 91 public repositories matching this topic...
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
bioinformatics
snps
medicine
genomics
genome
cancer
biology
vcf
ensembl
medical
cancer-genomics
genome-annotation
proteomics
gtf
bed
cancer-genomes
genome-sequencing
genome-browser
genomes
csv-parser
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Sep 21, 2020 - Python
Eukaryotic Genome Annotation Pipeline
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Jul 2, 2021 - Python
Genomic Data Retrieval with R
r
genomics
genome
metagenomics
rstats
genome-annotation
r-package
meta-analysis
genome-retrieval
biomart
database-retrieval
ncbi-genbank
ensembl-servers
sequenced-genomes
proteome
peer-reviewed
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Mar 18, 2021 - R
Extensive de-novo TE Annotator
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Jun 19, 2021 - Perl
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
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Aug 6, 2020 - Perl
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
python
bioinformatics
server
genomics
health
variants
global
rna
genome-annotation
ga4gh
reference-implementation
alliance
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Jan 24, 2018 - Python
Rapid & standardized annotation of bacterial genomes & plasmids
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Jul 1, 2021 - Python
Tools to annotate genomes using long read transcriptomics data
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Dec 8, 2020 - Go
Genome Annotation Without Nightmares
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Jun 30, 2021 - Perl
A toolkit for annotation of transposable element families from unassembled sequence reads
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Apr 25, 2019 - Perl
convert various features into a GFF-like file for use in genome browsers
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May 18, 2021 - Python
A parallel wrapper for LTR_FINDER
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Jan 28, 2020 - Perl
Read Assembly and Annotation Pipeline Tool
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Mar 20, 2021
A tool for discovering transposable elements and describing patterns of genome evolution
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Jan 8, 2021 - Perl
Efficiently keep track of changes to genomes
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Jun 10, 2021 - Python
Pipeline for annotating genomes using long read transcriptomics data with pinfish
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Dec 8, 2020 - Python
GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
bioinformatics
genomics
dotnet
genome-annotation
gcmodeller
scibasic
microsoft-visualbasic
biological-data-analysis
language-hybrids-environment
r-language
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Jul 2, 2021 - Visual Basic .NET
Example client programs for Saphetor's VarSome annotation API
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May 28, 2021 - Python
Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=annotatr.
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May 21, 2021 - R
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
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Jan 10, 2021 - Shell
Toolkit for preparing genomes for submission to NCBI
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Jan 23, 2020 - Perl
TREDPARSE: HLI Short Tandem Repeat (STR) caller
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Aug 20, 2020 - Python
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
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May 13, 2021 - Python
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Apr 20, 2021 - Dockerfile
A repo contains historical and updated MTEC libraries.
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Feb 6, 2020 - Perl
Database-Integrated Genome Screening (DIGS) tool. Explore genomes interactively using BLAST and a relational database.
data-mining
evolution
genome-annotation
comparative-genomics
blast-searches
transposable-elements
similarity-search
molecular-genetics
sequence-similarity
paleovirology
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Jun 3, 2021 - Perl
Desktop tool for microbial genome annotation and gene detection
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Jun 22, 2021 - Jupyter Notebook
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Is this on anyone's radar? I know it's a simple item to add directly