Aggregate results from bioinformatics analyses across many samples into a single report.
Python
Updated Apr 24, 2019
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference geno…
C++
Updated Sep 11, 2018
Structural variation caller using third generation sequencing
HTML
Updated Apr 16, 2019
Toolset for SV simulation, comparison and filtering
C++
Updated Apr 19, 2019
Download genomes the easy way.
Python
Updated Apr 4, 2019
Chanjo provides a better way to analyze coverage data in clinical sequencing.
Python
Updated Jan 29, 2019
Recommendations to contenarized your bioinformatics software
Shell
Updated May 30, 2018
Dugong - Scientific Linux Container
Shell
Updated Aug 13, 2017
BioContainers Documentation.
JavaScript
Updated Mar 27, 2019
A quick overview of how to use Bioconda, and create recipes
Jupyter Notebook
Updated Dec 12, 2018
Data analysis related to the bioconda paper
Python
Updated Apr 17, 2018
Get exons from a transcriptome and raw genomic reads using abyss-bloom and bedtools
Python
Updated Apr 12, 2019
Build a Reproducible Jupyter Workflow From Scratch (2017 NIH Hour of Code)
Jupyter Notebook
Updated Jan 11, 2018
This project aims do describe and explore the metagenomes of fern species of the genus Azolla.
Python
Updated Apr 25, 2019
Snakemake environment with `environment.yml` within Binder
snakemake pipeline for gatk running on binder
HTML
Updated Apr 29, 2019
Communities dump their resource/software information, and have them merged
Updated Mar 31, 2017