Repository for the CWL standards. Use https://www.biostars.org/t/cwl/ for support 😊
Common Workflow Language
CWL documents describe workflows made of command line data analysis tools in a portable, reproducible, and reusable fashion.
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- Created by Peter Amstutz, John Chilton, Michael R. Crusoe, Nebojša Tijanić, and the CWL Community
- Released January 2015
Repositories 93
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Python
Updated Mar 22, 2019
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to m…
workflow-execution
workflow
cloud
hpc
bioinformatics
executor
scala
docker
ga4gh
containers
wdl
workflow-description-language
cwl
common-workflow-language
application
Scala
Updated Mar 22, 2019
An open source platform for managing and analyzing biomedical big data
arvados
ruby
python
go
docker
cluster
cloud
cwl
bigdata
bioinformatics
genomics
workflow
aws
gcp
azure
Ruby
Updated Mar 21, 2019
Common Workflow Language reference implementation
Community maintained workflows & tools (with examples)
Common Workflow Language
Updated Mar 4, 2019
Visual and code editor for Common Workflow Language
Reproducible Analyses for Bioinformatics - Java
Common Workflow Language
Updated Jan 31, 2019
Our VM/Docker sharing infrastructure and management component
The WES API is a standard way to run and manage portable workflows.
Python
Updated Dec 13, 2018
REANA: Reusable research data analysis platform
research-data
reproducible-research
reproducible-workflows
kubernetes
containers
cwl
reusable-science
Python
Updated Mar 19, 2019
A library for generating an interactive SVG visualization of CWL workflows
TypeScript
Updated Mar 18, 2019
Create cwl workflows by writing a simple Python script
Python
Updated Nov 28, 2018
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coo…
HTML
Updated Mar 19, 2019
A new open source tool to run CWL workflows on LSF
Java
Updated Mar 13, 2019
NLP pipeline software using common workflow language
Python
Updated Jan 8, 2019
[Experimental] Workflow Definition Language (WDL) to CWL
Python
Updated Dec 19, 2018
Typescript data model for Common Workflow Language
A web application to view and share Common Workflow Language workflows
Java
Updated Jan 26, 2019
APIs for discovering genomics tools, their metadata and their containers
Shell
Updated Mar 20, 2019
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
workflow
workflow-engine
etl-framework
bioinformatics
cwl
cwl-workflow
wdl
wdl-workflow
batch-job
aws
gcp
docker
docker-machine
Go
Updated Nov 14, 2018
CWL tools and workflows for GGR
Common Workflow Language
Updated Nov 2, 2018
Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows
CWL (and input file) parser for Golang, used by github.com/otiai10/yacle
Go
Updated Mar 19, 2019
Yet Another CWL Engine by Golang
Go
Updated Mar 19, 2019
cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.
Python
Updated Oct 26, 2018
CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
Common Workflow Language
Updated Oct 12, 2018
This project will have the files for a Cube Sat Telemetry system Using Raspberry Pi Transmitter Board
Shell
Updated Feb 15, 2018
Perl
Updated Sep 28, 2017
SCREW: A Reproducible Workflow for Single-Cell Epigenomics
R
Updated Oct 22, 2017
Learn about cwl
- Organization
- common-workflow-language
- Website
- www.commonwl.org
- Wikipedia
- Wikipedia