mdeff / fma

FMA: A Dataset For Music Analysis

dataset music-analysis music-information-retrieval deep-learning open-data open-science reproducible-research

Jupyter Notebook Updated May 15, 2019

InsightSoftwareConsortium / ITK

Insight Toolkit (ITK) -- Official Repository

itk insight-toolkit c-plus-plus python image-analysis medical-imaging scientific-computing open-science open-source reproducible-research

Good first issues

See all

ITK Testing Macros should be prefixed with ITK_

Good first issue type:Style

#940 opened 5 days ago by hjmjohnson

Clean up clang macros

Good first issue type:Compiler

#845 opened 18 days ago by dzenanz

Standardize documentation in `Utilities` scripts

Good first issue area:Documentation

#796 opened 26 days ago by jhlegarreta

1

C++ Updated May 26, 2019

openml / OpenML

338

Open Machine Learning

machine-learning open-science science citizen-scientists collaboration opendata datasets

Good first issues

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API can't filter datasets by uploader

Good first issue CoreSystem

#930 opened 3 months ago by joaquinvanschoren

Retrieve dataset uploader via API?

Good first issue CoreSystem

#906 opened 5 months ago by mfeurer

1

Non-technical explanation of task, flow and run

beginner Hacktoberfest

#470 opened over 1 year ago by HeidiSeibold

2

CSS Updated May 24, 2019

anahitasocial / anahita

324

Anahita is a platform and framework for developing open science and knowledge sharing applications on a social networ…

graph-architecture framework platform knowledge-sharing open-science open-data location-graph social-apps social-networking social-network-graph social-media

PHP Updated Feb 12, 2019

zenodo / zenodo

310

Research. Shared.

zenodo invenio python research-data-repository research-data-management flask digital-library open-science open-access scientific-publications library-management elasticsearch postgresql inveniosoftware

Good first issues

See all

Contact form: when there is not name, one cannot submit

Low-hanging fruit Bug

#1759 opened about 1 month ago by jbenito3

Show Concept DOI on Deposit

Low-hanging fruit Enhancement

#1703 opened 3 months ago by jbenito3

datacite: include "formats" field from file mimetypes

Low-hanging fruit Enhancement

#1687 opened 4 months ago by slint

Python Updated May 23, 2019

Spirals-Team / repairnator

278

Software development bot that automatically repairs programs and build failures on Travis Continuous Integration. Joi…

java program-repair bot ci research open-science kth inria repair

Good first issues

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improve dockerpool: use a thread for inspecting docker containers to clean

good-first-issue enhancement

#719 opened 10 months ago by surli

improve dockerpool: put right names and don't use deprecated method

good-first-issue enhancement

#720 opened 10 months ago by surli

feat: allow to use a template for PR title/body

good-first-issue enhancement

#704 opened 10 months ago by surli

Java Updated May 24, 2019

cernopendata / opendata.cern.ch

259

Source code for the CERN Open Data portal

open-data open-science research-data research-data-repository research-data-management flask json-schema python invenio inveniosoftware digital-library digital-repository open-research-data big-data

HTML Updated May 24, 2019

softwareunderground / awesome-open-geoscience

250

Curated from repositories that make our lives as geoscientists, hackers and data wranglers easier or just more awesome

Good first issues

Add back Digital Rocks Portal

good first issue help wanted

#77 opened 19 days ago by leouieda

Updated May 21, 2019

Chicago / food-inspections-evaluation

232

This repository contains the code to generate predictions of critical violations at food establishments in Chicago. I…

chicago data-science open-data open-science food-poisoning cdph public-health

HTML Updated Apr 15, 2019

orfeotoolbox / OTB

228

Github mirror of https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb

otb orfeotoolbox cpp14 osgeo open-source image-processing remote-sensing open-science reproducible-research

GLSL Updated May 24, 2019

tdurieux / anonymous_github

220

Anonymous Github is a proxy server to support anonymous browsing of Github repositories for open-science code and data.

anonymous open-science double-blind

Python Updated May 14, 2019

OpenChemistry / tomviz

177

Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data

tomography visualization 3d-graphics open-source opengl scientific-visualization open-science python materials-science

C++ Updated May 21, 2019

simpeg / simpeg

147

Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter esti…

Good first issues

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numpy-styled docs

docs

#703 opened 11 months ago by lheagy

Features list

docs example

#700 opened 11 months ago by prisae

1

add .ipynb to gitignore

Good First Issue community

#634 opened over 1 year ago by lheagy

Python Updated May 24, 2019

InsightSoftwareConsortium / itk-jupyter-widgets

144

Interactive Jupyter widgets to visualize images in 2D and 3D

itk insight-toolkit jupyter jupyter-widget image-analysis scientific-computing scientific-visualization open-source open-science reproducible-research python medical-visualization jupyterlab-extension imaging

Python Updated May 19, 2019

openSNP / snpr

137

The sources of the openSNP website

open-science rails opensnp bioinformatics

HTML Updated Dec 6, 2018

gwastro / pycbc

119

Core package to analyze gravitational-wave data, find signals, and study their parameters. This package was used in t…

astronomy physics gravity ligo gravitational-waves pycbc analysis python black-hole neutron-star gwastro virgo signal-processing open-science

Python Updated May 26, 2019

yochannah / code-is-science

113

Scientific code needs to be open source and peer reviewed

open-science open-source science javascript

Good first issues

add icons for the nav links in the top bar

good first issue help wanted

#40 opened about 1 year ago by yochannah

14

Add links to manifesto and manifesto comments to homepage

good first issue code-task

#29 opened about 1 year ago by yochannah

7

HTML Updated Oct 9, 2018

pyvista / pyvista

111

3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)

vtk open-science python visualization visualize-data 3d meshviewer scientific-visualization scientific-research finite-elements finite-volume plotting mesh mesh-processing

Good first issues

See all

Document difference between Point, Cell, & Field Data

documentation 🍏 low-hanging-fruit

#209 opened 19 days ago by banesullivan

vtkinterface.readthedocs pops up in google searches for vtki but is empty

documentation

#183 opened about 1 month ago by mmagnuski

4

Create a banner for home page

documentation discussion

#159 opened about 2 months ago by banesullivan

6

Python Updated May 25, 2019

OpenKnowledgeMaps / Headstart

110

A framework for creating web-based knowledge maps

visualization open-science discovery-interface scholarly-communication

Good first issues

See all

Change "Keywords:" to "Keywords: n/a"

good first issue enhancement

#255 opened 11 months ago by tanteuschi

2

PubMed integration fails on queries with an apostrophe

good first issue API

#178 opened over 1 year ago by pkraker

Update to webpack 2

good first issue enhancement

#127 opened about 2 years ago by pkraker

1

Java Updated May 16, 2019

OpenChemistry / avogadrolibs

93

Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistr…

chemistry scientific-computing open-source open-science opengl visualization desktop compchem avogadro computational-chemistry

Good first issues

See all

Continue modernizing code

good first issue help wanted

#298 opened 11 months ago by ghutchis

3

Add Mac build to Travis CI

good first issue build

#232 opened about 1 year ago by ghutchis

"Reset View" Command

good first issue enhancement

#221 opened about 1 year ago by ghutchis

1

C++ Updated May 23, 2019

openml / openml-r

73

R package to interface with OpenML

Good first issues

Error 131 uploading data set

type-documentation

#353 opened about 2 years ago by HeidiSeibold

3

https://openml.github.io/openml-r/ is out of date

type-documentation prio-high

#329 opened about 2 years ago by mb706

1

Documentation of listing data.frames

type-documentation

#304 opened over 2 years ago by HeidiSeibold

6

Jupyter Notebook Updated Apr 23, 2019

openlists / OpenData

66

A list of openly available datasets in (mostly human) electrophysiology.

data open-data open-science research electrophysiology electrophysiological-data eeg meg ecog lfp

Updated Mar 3, 2019

commontk / dcmjs

66

dcmjs is a javascript cross-compile of dcmtk (dcmtk.org).

dicom javascript imaging open-science reproducible-science webassembly asmjs wasm emscripten dcmtk

CMake Updated May 16, 2019

CenterForOpenScience / helm-charts

65

Kubernetes Helm Charts for the Center for Open Science

kubernetes helm osf open-science helm-charts

Smarty Updated May 2, 2019

OpenGeoVis / PVGeo

64

Python package of VTK-based algorithms to analyze geoscientific data and models

data-visualization geophysics geosciences paraview-plugin paraview visual-data-integration open-science python model-building vtk visualization 3d

Good first issues

Documentation

docs help wanted

#37 opened 4 months ago by banesullivan

Python Updated May 22, 2019

asoplata / open-computational-neuroscience-resources

61

A publicly-editable collection of open computational neuroscience resources

neuroscience neuroscience-data neural-simulators neuroimaging-data electrophysiological-data neuroscience-methods computational-neuroscience computational-biology awesome awesome-list open-science

Updated Sep 23, 2018

INRIA / awesome-open-science-software

60

awesome open list of pointers about open science for software and computational science

open-science reproducible-research reproducible-experiments computational-science

Updated Dec 3, 2018

osfclient / osfclient

60

A python library and command-line client for file storage on OSF

science open-science data-management osf python

Good first issues

See all

Explain how to install osfclient

documentation first contribution

#92 opened almost 2 years ago by betatim

1

EOF occurred in violation of protocol error

documentation

#74 opened almost 2 years ago by nkmeyers

16

Docs on getting started writing new tests, especially regarding mock

documentation

#71 opened almost 2 years ago by betatim

Python Updated Sep 17, 2018

oxinabox / DataDeps.jl

59

reproducible data setup for reproducible science

data data-science open-science

Julia Updated May 16, 2019

NeurodataWithoutBorders / pynwb

52

A Python API for working with Neurodata stored in the NWB Format

neuroscience python hdf hdf5 cross-platform open-data data-format open-source open-science reproducible-research pynwb nwb nwb-n neurodata-without-borders

Good first issues

See all

Create tutorial on linking data

docs good first issue help wanted

#883 opened about 1 month ago by oruebel

Convert between pixel mask and image mask

good first issue

#669 opened 8 months ago by ajtritt

3

simplify NWBFile.create_electrode_table_region

good first issue

#654 opened 8 months ago by ajtritt

Python Updated May 24, 2019

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Good first issues

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